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Rhizosphere metagenome

ABSTRACT: A two-year metatranscriptomic analysis of rhizosphere biota at the Gi-FACE

PROVIDER: PRJNA362841 | ENA |

REPOSITORIES: ENA

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			Action	DRS
	SRR5196750_1.fastq.gz	Fastqsanger.gz
	SRR5196750_2.fastq.gz	Fastqsanger.gz
	SRR5196760_1.fastq.gz	Fastqsanger.gz
	SRR5196760_2.fastq.gz	Fastqsanger.gz
	SRR5196770_1.fastq.gz	Fastqsanger.gz

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Project description:Gene expression patterns of the plant colonizing bacterium,Pseudomonas putida KT2440 were evaluated as a function of growth in the Arabidopsis thaliana rhizosphere. Gene expression in rhizosphere grown P. putida cells was compared to gene expression in non-rhizosphere grown cells. Keywords: Gene expression

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Project description:It has been performed a genome-wide analysis of gene expression of the root-colonizing bacterium Pseudomonas putida KT2440 in the rhizosphere of corn (Zea mays var. Girona. To identify reliable rhizosphere differentially expressed genes, rhizosphere populations of P. putida bacteria cells were compared with three alternative controls: i) planktonic cells growing exponentially in rich medium (LB), ii) planktonic cells in stationary phase in LB, and iii) sessile populations established in sand microcosms, under the same conditions used to grow inoculated corn plants.

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