Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Arabidopsis thaliana

ABSTRACT: small RNA sequencing from leaf of Arabidopsis to identify tsRNA

PROVIDER: PRJNA378353 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR5318050.fastq.gz	Fastqsanger.gz
	SRR5318060.fastq.gz	Fastqsanger.gz
	SRR5318070.fastq.gz	Fastqsanger.gz
	SRR5318051.fastq.gz	Fastqsanger.gz
	SRR5318061.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 26

Similar Datasets

small RNA sequencing from leaf of Arabidopsis to identify tsRNA

Project description:small RNA sequencing from leaf of Arabidopsis to identify tsRNA

| PRJNA1052296 | ENA

small RNA sequencing from leaf of Arabidopsis to identify tsRNA

Project description:tsRNA is newly found small non-coding RNA with important biological function. However, the knowlede of diversity, biogeneis and function of tsRNA in plant is still lacking. Here, we selected 10-60 nt small RNA for high-throughput sequencing and uncovered the diversity,biogenesis and potentical function of tsRNA in Arabidopsis.

2024-12-31 | GSE250167 | GEO

small RNA sequencing from leaf of Arabidopsis to identify tsRNA

2021-03-07 | GSE95768 | GEO

ARGONAUTE-small RNA Interactions in Arabidopsis thaliana Identified by High-Throughput Sequencing

2008-08-16 | GSE12037 | GEO

Arabidopsis thaliana Col-0 inflorescence small RNAs

Project description:Small RNA sequences from Arabidopsis thaliana Col-0 inflorescence tissues of three biological replicates. The data were analyzed to identify non-templated nucleotides in Arabidopsis small RNAs.

2016-05-18 | GSE79119 | GEO

Arabidopsis thaliana leaf parallel analysis of RNA ends

Project description:Arabidopsis thaliana leaf parallel analysis of RNA ends

2018-06-25 | GSE113958 | GEO

Arabidopsis thaliana

Project description:small RNA sequencing of Arabidopsis

| PRJNA1096839 | ENA

Arabidopsis thaliana

Project description:Small RNA sequencing in Arabidopsis plants

| PRJNA157121 | ENA

ChIP-seq of Arabidopsis ARGONAUTE-small RNA interactions in Arabidopsis thaliana identified by high-throughput sequencing

Project description:The goal of this study was to identify small RNA-ARGONAUTE interactions in Arabidopsis. Co-immunoprecipitation assays followed by high-throughput sequencing were done to identify small RNA associated with HA-AGO2 and HA-AGO7. Experiment Overall Design: Sequencing-by-synthesis technology was used to sequence small RNA from input and co-immunoprecipitation fractions from cell lysates of inflorescence tissue from Arabidopsis plants transformed with HA epitope-tagged AGO2 or AGO7 constructs. Meaningful intepretation requires comparison between the input and co-immunoprecipitation datasets. Experiment Overall Design: Note: Raw data files requested, however, the submitter declined to provide them.

2009-08-30 | E-GEOD-12037 | biostudies-arrayexpress

Characterization of the small RNA populations of developing Arabidopsis thaliana pollen.

Project description:Small RNA diversity and function has been widely characterized in various tissues of the sporophytic generation of the angiosperm model Arabidopsis thaliana. In contrast, there is limited knowledge about small RNA diversity and their roles in developing male gametophytes. We thus carried out small RNA sequencing on RNA isolated from four stages of developing Arabidopsis thaliana pollen.

2014-07-01 | GSE34190 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data