Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Paenibacillus larvae subsp. larvae DSM 25430

ABSTRACT: Paenibacillus larvae subsp. larvae DSM 25430 Genome sequencing

PROVIDER: PRJNA42205 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other

Items per page:

1 - 1 of 1

Similar Datasets

Paenibacillus larvae subsp. larvae DSM 25719

Project description:Paenibacillus larvae subsp. larvae DSM 25719 Genome sequencing and assembly

| PRJNA42203 | ENA

Paenibacillus larvae subsp. larvae DSM 25430

Project description:Paenibacillus larvae subsp. larvae DSM 25430 Genome sequencing and assembly

| PRJNA358154 | ENA

Paenibacillus larvae subsp. larvae strain:DSM 7030 | isolate:ERICI

Project description:Paenibacillus larvae subsp. larvae strain:DSM 7030 | isolate:ERICI Genome sequencing and assembly

| PRJNA358141 | ENA

Paenibacillus larvae subsp. larvae

Project description:Paenibacillus larvae subsp. larvae from New Zealand

| PRJNA938963 | ENA

Paenibacillus larvae subsp. larvae B-3650

Project description:Paenibacillus larvae subsp. larvae B-3650 genome sequencing project

| PRJNA46259 | ENA

Paenibacillus larvae exoproteins of ERIC I-IV genotypes

Project description:The following strains of Paenibacillus larvae classified as ERIC I-IV genotypes (pl1-pl4) were used in the study: ERIC I - DSM-7030; ERIC II - DSM-25430; ERIC III - LMG-16252; and ERIC IV - DSM-3615. The 7 biological replicates (a-g) of the exoprotein fractions prepared from each ERIC genotype were used in the nanoLC-MS/MS analysis. All 28 samples were consecutively analyzed using an OrbitrapTM FusionTM Tribrid q-OT-IT mass spectrometer. To improve the protein identification and easy exclude contaminants from the medium, we considered the proteins that could originate from the yeast extract and Mueller-Hinton broth (contains beef fusion and casein peptone-acidic hydrolysate) in analyzing the MS data. Thus, we included the sequences related to Saccharomyces cerevisiae and Bos taurus, respectively, to the list of contaminants in MaxQuant. The contaminants.fasta file is provided. Futhermore, we provide the database (uniprot-paenibacillus+larvae.fasta) used for the identification of P. larvae proteins created of different strains of P. larvae. The sequences were downloaded of UniProt on 12.03.2019. Finally, the compressed (zipped) folder "combined" is provided. The data were analyzed in MaxQuant v1.6.3.4.

2019-03-27 | MSV000083636 | MassIVE

Paenibacillus larvae

Project description:Paenibacillus larvae Genome sequencing

| PRJNA362897 | ENA

Paenibacillus larvae subsp. larvae strain:PFR-Pl-2006

Project description:Paenibacillus larvae subsp. larvae strain:PFR-Pl-2006 Genome sequencing and assembly

| PRJNA938952 | ENA

Paenibacillus larvae subsp. larvae strain:ERICV | isolate:ERICV

Project description:Paenibacillus larvae subsp. larvae strain:ERICV | isolate:ERICV Genome sequencing and assembly

| PRJNA369467 | ENA

The overall response of Paenibacillus larvae to bodily fluids of honeybee larvae (Apis mellifera).

Project description:Paenibacillus larvae, the causal agent of American Foulbrood disease (AFB), affects honeybee health worldwide. The present study investigates the transcriptional response of this Gram-positive, endospore-forming bacterium to bodily fluids from honeybee larvae. Four different conditions were evaluated with a loop design: sampling of in vitro grown P. larvae cultures one or four hours after addition of larval fluids or BHIT-broth (C1, T1, C4, T4).

2014-12-22 | GSE37481 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data