Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Pseudomonas

ABSTRACT: Draft genome sequences of Pseudomonas isolates collected at Oak Ridge Field Research Center

PROVIDER: PRJNA428890 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other
	SRR7216360_1.fastq.gz	Fastqsanger.gz
	SRR7216360_2.fastq.gz	Fastqsanger.gz
	SRR7216370_1.fastq.gz	Fastqsanger.gz
	SRR7216370_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 279

Similar Datasets

Genome sequences of four Pseudomonads from Oak Ridge Field Research Center

Project description:Genome sequences of four Pseudomonads from Oak Ridge Field Research Center

| PRJEB15108 | ENA

groundwater metagenome

Project description:Groundwater from Oak Ridge Integrated Field Research Center, Tennessee - FW301 metagenome

| PRJNA336663 | ENA

Pseudomonas

Project description:Genome assemblies for pseudomonads isolated from groundwater at the Oak Ridge Field Research Center

| PRJNA642738 | ENA

Project description:Sediment and Groundwater Metagenomes from Subsurface Microbial Communities from the Oak Ridge National Laboratory Field Research Center, Oak Ridge, TN, USA

| PRJNA1001011 | ENA

groundwater metagenome

Project description:Oak Ridge Integrated Field Research Challenge (OR-IFRC) Metagenomes

| PRJNA258175 | ENA

Unraveling the Molecular Mechanism of Biofilm Formation by Rhodanobacter under Environmental Stressors

Project description:Bacteria are known to adhere to surfaces via self-produced extracellular polymeric substances organized as biofilms. In subsurface areas with low oxygen, limited nutrients, and toxic contaminants, biofilms are crucial for microbial survival and persistence. However, the relationship between biofilm formation and survival in such environments is not well-documented. At the Oak Ridge Reservation Field Research Center (ORRFRC), we observed a high abundance of Rhodanobacter species in conditions with elevated nitrate, metals, organics, and nitric acid. This study investigated the role of biofilm formation in their survival and the underlying molecular mechanisms in diverse geochemical niches. We examined sixteen phylogenetically diverse Rhodanobacter strains for biofilm formation under varying nutrient, pH, and nitrate conditions. Our findings indicate that biofilm formation is a strain-specific phenotype, correlating with environmental stresses, especially in low pH and nitrate conditions. Comparative genomic analysis revealed unique traits in the high biofilm-forming FW021-MT20 strain, such as the absence of flagella and chemotaxis genes and the presence of unique secretion system VI genes, as supported by pangenomic results. Additional tests on biofilm formation in response to field-relevant metals highlighted increased biofilm formation under aluminum stress in strains typically exhibiting weaker biofilm capabilities. Further investigation using RB-Tnseq, proteomics, and TEM indicated flagellar loss under aluminum stress, linked to increased cyclic AMP and di-GMP levels. Our results shed light on the adaptive strategies of Rhodanobacter strains in subsurface environments, suggesting genetic factors linked to biofilm formation and metal stress tolerance, thereby enhancing our understanding of microbial survival under environmental stress.

2025-03-08 | PXD049428 | Pride

Expression diversity in Phytophthora ramorum

Project description:Expression diversity of P. ramorum isolates belonging to the NA1 clonal lineage growing on solid CV8 was examined. It was found that although all the analyzed isolates belonged to a single clonal lineage, expression patterns were distinctive between isolates originating from coast live oak and California bay laurel. Global expression patterns of 13 isolates originating from coastal live oak and California bay laurel was investigated. No biological replicates were generated. The sequenced strain Pr102 was included. Gene models Phytophthora ramorum v1.0 were used to construct NimbleGen 72K x4 custom arrays.

2012-03-01 | E-GEOD-36178 | biostudies-arrayexpress

Expression diversity of Phytophthora ramorum from canyon live oak

Project description:Expression diversity of P. ramorum isolates belonging to the NA1 clonal lineage growing on solid CV8 was examined. We found that phenotypes and transcriptomes change when isolates were passing through oak trees.

2014-10-24 | GSE62643 | GEO

Pseudomonas

Project description:Draft Genome Sequences of Pseudomonas syringae Bean Isolates

| PRJNA481030 | ENA

Pseudomonas

Project description:Draft Genome Sequences of Pseudomonas syringae Coffee Isolates

| PRJNA481034 | ENA