Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Amylostereum chailletii

ABSTRACT: Amylostereum chailletii overview

PROVIDER: PRJNA445082 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other
	SRR6447799_1.fastq.gz	Fastqsanger.gz
	SRR6447799_2.fastq.gz	Fastqsanger.gz
	SRR7974112_1.fastq.gz	Fastqsanger.gz
	SRR7974112_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 5

Similar Datasets

Amylostereum areolatum

Project description:Amylostereum areolatum overview

| PRJNA1213200 | ENA

Amylostereum chailletii strain:DWAch2

Project description:Amylostereum chailletii DWAch2 transcriptome

| PRJNA444428 | ENA

Amylostereum chailletii strain:DWAch2

Project description:Amylostereum chailletii DWAch2 Genome sequencing

| PRJNA265560 | ENA

Amylostereum areolatum strain:B1352

Project description:Amylostereum areolatum strain:B1352 Raw sequence reads

| PRJNA1213175 | ENA

Amylostereum areolatum strain:HG-01

Project description:Amylostereum areolatum strain:HG-01 Genome sequencing and assembly

| PRJNA513942 | ENA

Identification and Validation of Reference Genes for Gene Expression Analysis in Different Development Stages of <i>Amylostereum areolatum</i>.

Project description:A strict relationship exists between the Sirex noctilio and the Amylostereum areolatum, which is carried and spread by its partner. The growth and development of this symbiotic fungus is key to complete the life history of the Sirex woodwasp. Real-time quantitative polymerase chain reaction (RT-qPCR) is used to measure gene expression in samples of A. areolatum at different growth stages and explore the key genes and pathways involved in the growth and development of this symbiotic fungus. To obtain accurate RT-qPCR data, target genes need to be normalized by reference genes that are stably expressed under specific experimental conditions. In our study, the stability of 10 candidate reference genes in symbiotic fungal samples at different growth and development stages was evaluated using geNorm, NormFinder, BestKeeper, delta Ct methods, and RefFinder. Meanwhile, laccase1 was used to validate the stability of the selected reference gene. Under the experimental conditions of this study, p450, CYP, and γ-TUB were identified as suitable reference genes. This work is the first to systematically evaluate the reference genes for RT-qPCR results normalization during the growth of this symbiotic fungus, which lays a foundation for further gene expression experiments and understanding the symbiotic relationship and mechanism between S. noctilio and A. areolatum.

| S-EPMC8790227 | biostudies-literature

Snail ChIP-chip on Ciona intestinalis embryo (early gastrula)

Project description:A genomic overview of in vivo binding of a transcription factor Snail in the ascidian early gastrula embryo.

2010-03-09 | GSE17691 | GEO

Otx ChIP-chip on Ciona intestinalis embryo (early gastrula)

Project description:A genomic overview of in vivo binding of a transcription factor Otx in the ascidian early gastrula embryo.

2010-03-09 | GSE17690 | GEO

Tbx6b ChIP-chip on Ciona intestinalis embryo (early gastrula)

Project description:A genomic overview of in vivo binding of a transcription factor Tbx6b in the ascidian early gastrula embryo.

2010-03-09 | GSE17694 | GEO

SoxC ChIP-chip on Ciona intestinalis embryo (early gastrula)

Project description:A genomic overview of in vivo binding of a transcription factor SoxC in the ascidian early gastrula embryo.