Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Genome-wide maps of RNA Polymerase I and III in asynchronously growing yeast cells

ABSTRACT: Genome-wide maps of RNA Polymerase I and III in asynchronously growing yeast cells

PROVIDER: PRJNA445975 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR6908170.fastq.gz	Fastqsanger.gz
	SRR6908171.fastq.gz	Fastqsanger.gz
	SRR6908172.fastq.gz	Fastqsanger.gz
	SRR6908173.fastq.gz	Fastqsanger.gz
	SRR6908174.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 8

Similar Datasets

Genome-wide maps of DNA Polymerase pausing in asynchronously growing yeast cells

Project description:Genome-wide maps of DNA Polymerase pausing in asynchronously growing yeast cells

| PRJNA445974 | ENA

Genome-wide maps of histone H3 in asynchronously growing yeast cells

Project description:Genome-wide maps of histone H3 in asynchronously growing yeast cells

| PRJNA445976 | ENA

Genome-wide maps of nucleosome positioning in asynchronously growing yeast cells

Project description:Genome-wide maps of nucleosome positioning in asynchronously growing yeast cells

| PRJNA445977 | ENA

Genome-wide maps of RNA Polymerase I and III in asynchronously growing yeast cells

Project description:ChIP-seq of FLAG-tagged RPA190 (subunit of RNA Polymerase I) or FLAG-tagged RPO31 (subunit of RNA Polymerase III) was performed on WT and isw2∆ nhp10∆ cells. Sample naming convention: <ChIP target>_<growth condition>_<genotype>_<strain name>

2018-10-30 | GSE112425 | GEO

Genome-wide maps of chromatin remodeling factors Isw2 and Ino80 in asynchronously growing yeast cells

Project description:Genome-wide maps of chromatin remodeling factors Isw2 and Ino80 in asynchronously growing yeast cells

| PRJNA445972 | ENA

Genome-wide maps of DNA Polymerase pausing in asynchronously growing yeast cells

Project description:ChIP-seq of FLAG-tagged Pol2 (subunit of DNA Polymerase epsilon) was performed on two independent isolates of each of WT, isw2∆, nhp10∆, and isw2∆ nhp10∆ cells. Sample naming convention: <ChIP target>_<growth condition>_<genotype-replicate>_<strain name>

2018-10-30 | GSE112426 | GEO

Genome-wide maps of nucleosome positioning in asynchronously growing yeast cells

Project description:MNase-seq was performed in WT, isw2∆, nhp10∆, and isw2∆ nhp10∆ cells. Sample naming convention: MNase_<growth condition>_<genotype-replicate>_<strain name>_<units MNase>

2018-10-30 | GSE112427 | GEO

Genome-wide maps of histone H3 in asynchronously growing yeast cells

Project description:ChIP-seq of histone H3 was performed on two biological replicates of the same W303 strain of wild-type cells and two independent isolates of each of isw2∆, nhp10∆, and isw2∆ nhp10∆ cells. Sample naming convention: <ChIP target>_<growth condition>_<genotype-replicate>_<strain name>

2018-10-30 | GSE112424 | GEO

Genome-wide maps of chromatin remodeling factors Isw2 and Ino80 in asynchronously growing yeast cells

Project description:ChIP-seq of Isw2 (subunit of Isw2 complex) and Nhp10 (subunit of Ino80 complex) was performed on two independent isolates of FLAG-tagged Isw2 or Nhp10 Sample naming convention: <ChIP target>_<growth condition>_<genotype-replicate>_<strain name>

2018-10-30 | GSE112423 | GEO

Genome replication in asynchronously growing microbial populations.

Project description:Biological cells replicate their genomes in a well-planned manner. The DNA replication program of an organism determines the timing at which different genomic regions are replicated, with fundamental consequences for cell homeostasis and genome stability. In a growing cell culture, genomic regions that are replicated early should be more abundant than regions that are replicated late. This abundance pattern can be experimentally measured using deep sequencing. However, a general quantitative theory linking this pattern to the replication program is still lacking. In this paper, we predict the abundance of DNA fragments in asynchronously growing cultures from any given stochastic model of the DNA replication program. As key examples, we present stochastic models of the DNA replication programs in budding yeast and Escherichia coli. In both cases, our model results are in excellent agreement with experimental data and permit to infer key information about the replication program. In particular, our method is able to infer the locations of known replication origins in budding yeast with high accuracy. These examples demonstrate that our method can provide insight into a broad range of organisms, from bacteria to eukaryotes.

| S-EPMC10796026 | biostudies-literature

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data