Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Pittosporum serpentinum

ABSTRACT: Pittosporum serpentinum shotgun sequencing

PROVIDER: PRJNA448793 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR6951304_1.fastq.gz	Fastqsanger.gz
	SRR6951304_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 2 of 2

Similar Datasets

Pittosporum tobira

Project description:Pittosporum tobira

| PRJNA970768 | ENA

Pittosporum tobira

Project description:Pittosporum tobira overview

| PRJNA755392 | ENA

Pittosporum tobira

Project description:Pittosporum tobira Raw sequence reads

| PRJNA578016 | ENA

Pittosporum illicioides

Project description:Pittosporum illicioides Raw sequence reads

| PRJNA1089813 | ENA

T. brucei genomes

Project description:Shotgun sequencing of various T. brucei isolates

2016-01-04 | E-MTAB-3800 | biostudies-arrayexpress

Project description:Pittosporum transcriptome sequencing

| PRJNA553014 | ENA

Draft genome sequencing of Lactuca. sativa cv. Tizian

Project description:The draft genome of L. sativa (lettuce) cv. Tizian was sequenced in two Illumina sequencing runs, mate pair and shotgun. This entry contains the RAW sequencing data.

2018-02-09 | E-MTAB-6347 | biostudies-arrayexpress

RNA-directed DNA methylation in near-gene chromatin regulation

Project description:The purpose of this study was to measure DNA methylation and siRNA expression across the maize genome. The experimental data was derived from shotgun bisulfite sequencing, siRNA sequencing, and mRNA sequencing (Illumina, single end for all three)

2012-12-12 | E-MTAB-4329 | biostudies-arrayexpress

Unlock the mystery of the hard-to-sequence phage genome: discovering a novel mechanism of bacterial immunity

Project description:Whole-genome sequencing is an important way to understand the genetic information, gene function, biological characteristics, and living mechanisms of organisms. There is no difficulty to have mega-level genomes sequenced at present. However, we encountered a hard-to-sequence genome of Pseudomonas aeruginosa phage PaP1. The shotgun sequencing method failed to dissect this genome. After insisting for 10 years and going over 3 generations of sequencing techniques, we successfully dissected the PaP1 genome with 91,715 bp in length. Single-molecule sequencing revealed that this genome contains lots of modified bases, including 51 N6-methyladenines (m6A) and 152 N4-methylcytosines (m4C). At the same time, further investigations revealed a novel immune mechanism of bacteria, by which the host bacteria can recognize and repel the modified bases containing inserts in large scale, and this led to the failure of the shotgun method in PaP1 genome sequencing. Strategy of resolving this problem is use of non-library dependent sequencing techniques or use of the nfi- mutant of E. coli DH5M-NM-1 as the host bacteria to construct the shotgun library. In conclusion, we unlock the mystery of phage PaP1 genome hard to be sequenced, and discover a new mechanism of bacterial immunity in present study. Methylation profiling of Pseudomonas aeruginosa phage PaP1 using kinetic data generated by single-molecule, real-time (SMRT) sequencing on the PacBio RS.

2013-08-22 | E-GEOD-50100 | biostudies-arrayexpress

Project description:Pittosporum transcriptome sequencing-01

| PRJNA553027 | ENA