Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Next Generation Sequencing Facilitates Quantitative Analysis of Original and RCHO-resistant NU-DUL-1 cell Transcriptomes

ABSTRACT: Next Generation Sequencing Facilitates Quantitative Analysis of Original and RCHO-resistant NU-DUL-1 cell Transcriptomes

PROVIDER: PRJNA449711 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR6984690.fastq.gz	Fastqsanger.gz
	SRR6984691.fastq.gz	Fastqsanger.gz
	SRR6984692.fastq.gz	Fastqsanger.gz
	SRR6984693.fastq.gz	Fastqsanger.gz
	SRR6984694.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 6

Similar Datasets

Next Generation Sequencing Facilitates Quantitative Analysis of Original and RCHO-resistant NU-DUL-1 cell Transcriptomes

Project description:The goal of this study is to screen the differential genes between original and RCHO-resistant NU-DUL-1 cells, then analyze the significant pathways.

2020-03-30 | GSE113001 | GEO

Next Generation Sequencing Facilitates Quantitative Analysis of Original and RCHO-resistant OCI-LY8 cell Transcriptomes

Project description:The goal of this study is to screen the differential genes between original and RCHO-resistant OCI-LY8 cells, then analyze the significant pathways.

2020-03-30 | GSE112989 | GEO

Next Generation Sequencing Facilitates Quantitative Analysis of Original and RCHO-resistant OCI-LY8 cell Transcriptomes

Project description:Next Generation Sequencing Facilitates Quantitative Analysis of Original and RCHO-resistant OCI-LY8 cell Transcriptomes

| PRJNA449690 | ENA

Next Generation Sequencing Facilitates Quantitative Analysis of root of original buckwheat (Fagopyrum hailuogouense) Transcriptomes

Project description:Next Generation Sequencing Facilitates Quantitative Analysis of root of original buckwheat (Fagopyrum hailuogouense) Transcriptomes

| PRJNA508529 | ENA

Next Generation Sequencing Facilitates Quantitative Analysis of original and mutant E. coli K-12 MG1655 Transcriptomes

Project description:Next Generation Sequencing Facilitates Quantitative Analysis of original and mutant E. coli K-12 MG1655 Transcriptomes

| PRJNA422780 | ENA

Microglia coordinate the anti-tumor immune response to breast cancer brain metastasis [Foxn1 nu/nu 10X data]

Project description:We used single-cell RNA-sequencing to investigate the role of brain-resident microglia versus infiltrating cells in a mouse model of breast cancer brain metastasis (BCBM). We generated brain metastases with a cardiac-injection of the human triple-negative breast cancer cell line MDA-MB-231BR2 (231BR) into Foxn1 nu/nu mice and allowed tumors to grow in the brain for four weeks. We then compared astrocytes (ASCA2+CD45-) and myeloid cells (CD11b+CD45+) from these mice verses control Foxn1 nu/nu brains to find transcriptional changes associated with BCBM.

2023-09-01 | GSE147942 | GEO

RNASeq analysis of human ALDH- and ALDH+ DU145 xenografts in nu/nu mice upon radiotherapy treatment

Project description:Purpose: we aimed at identify and compare the transcriptional changes of ALDH- and ALDH+ DU145 xenografts upon radiotherapy treatment. Method: Xenografts were generated by injection of ALDH- and ALDH+ DU145 cells in male NMRI-Foxn1 nu/nu immune-deficient mice and subjected to fractionated irradiation to a final dose of 50 Gy. Tumors were excised and processed for total RNA extraction and RNAseq analysis.

2022-01-22 | GSE193963 | GEO

Lactobacillus phage Lc-Nu

Project description:Lactobacillus phage Lc-Nu overview

| PRJNA69581 | ENA

Next Generation Sequencing Facilitates Quantitative Analysis of original and mutant E. coli K-12 MG1655 Transcriptomes

Project description:The goals of this study are to use Next-generation sequencing (NGS)to detect bacterial mRNA profiles of original E. coli K-12 MG1655 and fluoxetine induced E. coli mutants in response to 100 mg/L fluoxetine for 8 h, in triplicate, using Illumina HiSeq 2500.The NGS QC toolkit (version 2.3.3) was used to treat the raw sequence reads to trim the 3’-end residual adaptors and primers, and the ambiguous characters in the reads were removed. Then, the sequence reads consisting of at least 85% bases were progressively trimmed at the 3’-ends until a quality value ≥ 20 were kept. Downstream analyses were performed using the generated clean reads of no shorter than 75 bp. The clean reads of each sample were aligned to the E. coli reference genome (NC_000913) using SeqAlto (version 0.5). Cufflinks (version 2.2.1) was used to calculate the strand-specific coverage for each gene, and to analyze the differential expression in triplicate bacterial cell cultures. The statistical analyses and visualization were conducted using CummeRbund package in R (http://compbio.mit.edu/cummeRbund/). Gene expression was calculated as fragments per kilobase of a gene per million mapped reads (FPKM, a normalized value generated from the frequency of detection and the length of a given gene.

2020-12-18 | GSE108190 | GEO

Camelina sativa cultivar:NU-52279

Project description:Camelina sativa NU-52279 Resequencing

| PRJNA535293 | ENA