Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Rat (Rattus norvegicus) cutaneous surface (back)

ABSTRACT: Rat (Rattus norvegicus) cutaneous surface (back) Metagenome

PROVIDER: PRJNA476545 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR8140390_1.fastq.gz	Fastqsanger.gz
	SRR8140390_2.fastq.gz	Fastqsanger.gz
	SRR8140400_1.fastq.gz	Fastqsanger.gz
	SRR8140400_2.fastq.gz	Fastqsanger.gz
	SRR8140410_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 116

Similar Datasets

postnatal fluoxetine evoked gene expression changes in the rat hippocampus

Project description:to understand the consequences of chronic exposure to fluoxetine during postnatal life on global transcriptional changes withing the rat hippocamps Agilent one-color experiment,Organism: Rattus Norvegicus, Agilent-016352 Genotypic designed Custom Rattus Norvegicus 8x15k, Labeling kit: Agilent Quick-Amp labeling Kit (p/n5190-0442)

2013-12-01 | E-GEOD-42940 | biostudies-arrayexpress

Hypoxia transcriptome sequencing of blind mole rat (BMR, Spalax galili) and rat (Rattus norvegicus)

Project description:Deep sequencing of mRNA from Spalax galili and Rattus norvegicus

2014-06-05 | GSE49485 | GEO

RNA-Seq of tissues from Rat eye and retina samples

Project description:We report RNA-Seq experiments of eye and retinal tissues from Rattus Norvegicus

2016-09-12 | GSE84932 | GEO

Hypoxia transcriptome sequencing of blind mole rat (BMR, Spalax galili) and rat (Rattus norvegicus)

Project description:Deep sequencing of mRNA from Spalax galili and Rattus norvegicus Total RNAs were isolated from the brain of female BMRs under various oxygen concentrations (3%, 6%, 10%, 14%, and 21%) for 6 hours. We also got RNAs from the brain of rats under 6%, 10%, 14%, and 21% oxygen conditions.

2014-06-05 | E-GEOD-49485 | biostudies-arrayexpress

A Rat Liver Cell Atlas Reveals Intrahepatic Myeloid Heterogeneity.

Project description:The large size and vascular accessibility of the laboratory rat (Rattus norvegicus) makes it an ideal hepatic animal model for diseases that require surgical manipulation. Often, the disease susceptibility and outcomes of inflammatory pathologies vary significantly between strains. This study uses single cell transcriptomics to better understand the complex cellular network of the rat liver, as well as to unravel the cellular and molecular sources of inter-strain hepatic variation. We generated single cell and single nucleus transcriptomic maps of the livers of healthy Dark Agouti and Lewis rat strains, and developed a factor analysis-based bioinformatics analysis pipeline to study data covariates, such as strain and batch. Using this approach, we discovered transcriptomic variation within the hepatocyte and myeloid populations that underlie distinct cell states between rat strains. This finding will help provide a reference for future investigations on strain-dependent outcomes of surgical experiment models.

2023-10-23 | GSE220075 | GEO

Molecular complexity of the major urinary protein system of the Norway rat, Rattus norvegicus C4PR_LIV

Project description:Major urinary proteins (MUP) are the major component of the urinary protein fraction in house mice (Mus spp.) and rats (Rattus spp.). The structure, polymorphism and functions of these lipocalins have been well described in the western European house mouse (Mus musculus domesticus), clarifying their role in semiochemical communication. The complexity of these roles in the mouse raises the question of similar functions in other rodents, including the Norway rat, Rattus norvegicus. Norway rats express MUPs in urine but information about specific MUP isoform sequences and functions is limited. In this study, we present a detailed molecular characterization of the MUP proteoforms expressed in the urine of two laboratory strains, Wistar Han and Brown Norway, and wild caught animals, using a combination of manual gene annotation, intact protein mass spectrometry and bottom-up mass spectrometry-based proteomic approaches. Detailed sequencing of the urinary MUP isoforms reveals a less complex pattern of primary sequence polymorphism in the rat than the mouse. However, rat MUPs exhibit added complexity in the form of post-translational modifications, including the phosphorylation of Ser4 in some isoforms, and exoproteolytic trimming of specific isoforms.

2019-08-01 | PXD013986 | Pride

Rattus norvegicus breed:SD rat

Project description:Rattus norvegicus breed:SD rat Raw sequence reads

| PRJNA865906 | ENA

Rattus norvegicus breed:SD rat

Project description:Rattus norvegicus breed:SD rat Raw sequence reads

| PRJNA1069334 | ENA

rat gut metagenome

Project description:Rattus norvegicus Metagenome

| PRJNA244909 | ENA

rat gut metagenome

Project description:Rattus norvegicus Metagenome