Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Solanum tuberosum

ABSTRACT: Genotyping-by-sequencing of Indian potatoes

PROVIDER: PRJNA488869 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR7785900_1.fastq.gz	Fastqsanger.gz
	SRR7785900_2.fastq.gz	Fastqsanger.gz
	SRR7785910_1.fastq.gz	Fastqsanger.gz
	SRR7785910_2.fastq.gz	Fastqsanger.gz
	SRR7785920_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 96

Similar Datasets

RNA sequencing results using Solanum tuberosum cv. Desiree at NT and HT at 3 and 8 weeks

Project description:Leaves of the potatoes grown for 3 and 8 weeks at NT and HT were harvested for total RNA extraction. Total RNA was extracted from 100 mg of ground leaves using the Trizol reagent (MRC) following the manufacturer’s instructions. Five micro gram of each RNA sample were generated for a strand-specific library as previously described. The library was containing inserts of 150-200 bp. For RNA sequencing, paired-end 150 nt sequencing was performed using a HiSeq 4000 platform (Illumina, USA) at Microgen (Korea).

2022-09-28 | GSE158644 | GEO

Solanum tuberosum

Project description:Genomic basis of divergence of modern cultivated potatoes

| PRJNA944441 | ENA

Solanum tuberosum

Project description:Solanum tuberosum Genotyping by Sequencing

| PRJNA1032882 | ENA

Solanum tuberosum

Project description:Genome design for inbred lines generates vigorous hybrid potatoes

| PRJNA641265 | ENA

Solanum tuberosum

Project description:Differences in the transcriptomes of organically and conventionally grown potatoes.

| PRJNA138483 | ENA

Solanum tuberosum strain:Sassy

Project description:k-mer analysis of genome-edited potatoes

| PRJDB15324 | ENA

Solanum tuberosum

Project description:Genotyping by Sequencing-Transcriptomics for Diversity and Application of Genomic Selection in Tetraploid Potato

| PRJNA479522 | ENA

High-throughput sequencing of small RNAs in Solanum tuberosum

Project description:Small RNAs (21-24 nt) are pivotal regulators of gene expression that guide both transcriptional and post-transcriptional silencing mechanisms in diverse eukaryotes, including most if not all plants. MicroRNAs (miRNAs) and short interfering RNAs (siRNAs) are the two major types, both of which have a demonstrated and important role in plant development, stress responses and pathogen resistance. In this work, we used a deep sequencing approach (Sequencing-By-Synthesis, or SBS) to develop sequence resources of small RNAs from Solanum tuberosum tissues (including leaves, flowers and stolon). The high depth of the resulting datasets enabled us to examine in detail critical small RNA features as size distribution, tissue-specific regulation and sequence conservation between different organs in this species. We also developed database resources and a dedicated website (http://smallrna.udel.edu/) with computational tools for allowing other users to identify new miRNAs or siRNAs involved in specific regulatory pathways, verify the degree of conservation of these sequences in other plant species and map small RNAs on genes or larger regions of the genome under study.

2011-09-30 | GSE32471 | GEO

Comparative genome analysis of Solanum lycopersicum and Solanum tuberosum.

Project description:Solanum lycopersicum and Solanum tuberosum are agriculturally important crop species as they are rich sources of starch, protein, antioxidants, lycopene, beta-carotene, vitamin C, and fiber. The genomes of S. lycopersicum and S. tuberosum are currently available. However the linear strings of nucleotides that together comprise a genome sequence are of limited significance by themselves. Computational and bioinformatics approaches can be used to exploit the genomes for fundamental research for improving their varieties. The comparative genome analysis, Pfam analysis of predicted reviewed paralogous proteins was performed. It was found that S. lycopersicum proteins belong to more families, domains and clans in comparison with S. tuberosum. It was also found that mostly intergenic regions are conserved in two genomes followed by exons, intron and UTR. This can be exploited to predict regions between genomes that are similar to each other and to study the evolutionary relationship between two genomes, leading towards the development of disease resistance, stress tolerance and improved varieties of tomato.

| S-EPMC3842579 | biostudies-literature

Solanum tuberosum cultivar:Kufri Jyoti

Project description:RNA-Sequencing of Indian potato cv. Kufri Jyoti for nitrogen use efficiency

| PRJNA529319 | ENA