Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Selaginella

ABSTRACT: JB and JN Raw sequence reads

PROVIDER: PRJNA503514 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR8149073_1.fastq.gz	Fastqsanger.gz
	SRR8149073_2.fastq.gz	Fastqsanger.gz
	SRR8149074_1.fastq.gz	Fastqsanger.gz
	SRR8149074_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 4 of 4

Similar Datasets

Morus alba Raw protein sequence reads

Project description:Morus alba L. Raw protein sequence reads and sequence

2024-02-08 | PXD049451 |

Selaginella moellendorffii

Project description:Selaginella moellendorffii Raw sequence reads

| PRJNA521765 | ENA

Selaginella moellendorffii

Project description:Selaginella moellendorffii Raw sequence reads

| PRJNA876762 | ENA

Selaginella

Project description:RNAseq raw sequence reads of Selaginella sellowii, Selaginella lepidophylla, Selaginella denticulata

| PRJNA625275 | ENA

DWTP JN AND DY

Project description:DWTP JN AND DY Raw sequence reads

| PRJNA863929 | ENA

RNA-Sequencing analysis of reproduction/meiosis in Selaginella moellendorffii

Project description:To investigate global gene expression during meiosis in S. moellendorfii, digital gene-expression profiling of a series of sporangia at different developmental stages was performed by Illumina HiSeq™ 2000 sequencing platforms, with young leaves being used as a control. The samples were collected from South Mountain, Chongqing (29°33'44.18"N; 106°37'35.62"E) and stored in RNAlater solution. Total RNAs were extracted using the TRIzol solution. The clean reads were aligned to the genome sequence of S. moellendorfii at JGI database by SOAP2. Gene expression levels were calculated from the number of uniquely aligned clean reads and then normalized into units of Reads Per Kilobase per Million reads mapped (RPKM). Genes were considered to be differentially expressed if they had an FDR < 0.05, P-value < 0.05, and the absolute value of log2Ratio ≥ 1 between reproductive and vegetative samples. As a result, 5416 genes were found to be up-regulated in reproductive/meiotic samples.

2019-06-27 | GSE83783 | GEO

Selaginella kraussiana cultivar:Aurea

Project description:Selaginella kraussiana cultivar:Aurea Raw sequence reads

| PRJNA629100 | ENA

Quantitative profiling of differentially expressed miRNAs in siCTL- and siOASL-transfected HUVECs

Project description:Purpose: The goal of this study is to compare endothelial small RNA transcriptome to identify the target of OASL under basal or stimulated conditions by utilizing miRNA-seq. Methods: Endothelial miRNA profilies of siCTL or siOASL transfected HUVECs were generated by illumina sequencing method, in duplicate. After sequencing, the raw sequence reads are filtered based on quality. The adapter sequences are also trimmed off the raw sequence reads. rRNA removed reads are sequentially aligned to reference genome (GRCh38) and miRNA prediction is performed by miRDeep2. Results: We identified known miRNA in species (miRDeep2) in the HUVECs transfected with siCTL or siOASL. The expression profile of mature miRNA is used to analyze differentially expressed miRNA(DE miRNA). Conclusions: Our study represents the first analysis of endothelial miRNA profiles affected by OASL knockdown with biologic replicates.

2022-09-06 | GSE186354 | GEO

Sequencing of siRNA from soybean containing silencing vectors and empty vectors

Project description:A cDNA library was constructed by Novogene (CA, USA) using a Small RNA Sample Pre Kit, and Illumina sequencing was conducted according to company workflow, using 20 million reads. Raw data were filtered for quality as determined by reads with a quality score > 5, reads containing N < 10%, no 5' primer contaminants, and reads with a 3' primer and insert tag. The 3' primer sequence was trimmed and reads with a poly A/T/G/C were removed

2021-07-21 | GSE180131 | GEO

Selaginella

Project description:Selaginella eremophila, Selaginella arizonica Genome sequence and transcriptome

| PRJNA893364 | ENA