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Transcriptome profiles of wild-type (AF293) and several mutants in Aspergillus fumigatus by RNA-Seq.

ABSTRACT: Transcriptome profiles of wild-type (AF293) and several mutants in Aspergillus fumigatus by RNA-Seq.

PROVIDER: PRJNA509673 | ENA |

REPOSITORIES: ENA

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			Action	DRS
	SRR8314030.fastq.gz	Fastqsanger.gz
	SRR8314031.fastq.gz	Fastqsanger.gz
	SRR8314032.fastq.gz	Fastqsanger.gz
	SRR8314023.fastq.gz	Fastqsanger.gz
	SRR8314024.fastq.gz	Fastqsanger.gz

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Transcriptome profiles of wild-type (AF293) and several mutants in Aspergillus fumigatus by RNA-Seq.

Project description:The mRNA profiles of [delta]rgsA, [delta]nopA, [delta]rgdA ([delta]swi4), [delta]mbpA ([delta]swi6) mutants and wild-type (AF293) of A. fumigatus.

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Expression analysis of trichostatin A-treated Aspergillus fumigatus Af293

Project description:Investigation of whole genome gene expression level changes in trichostatin A (TSA)-treated A. fumigatus Af293 compared to non-treated A. fumigatus Af293. Species: Aspergillus fumigatus; Strain: Af293; Type of array: Eukaryotic Expression (4plex, 2plex for a TSA-treated sample and 2plex for a non-treated sample); Technical replicates: Two per treatment.

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Comparative genomic hybridization of Aspergillus fumigatus Af71, Aspergillus fumigatus Af294, Aspergillus clavatus, Neosartorya fenneliae and Neosartorya fischeri with Aspergillus fumigatus Af293

Project description:Genomic DNA from five strains, Aspergillus fumigatus Af71, Aspergillus fumigatus Af294, Aspergillus clavatus, Neosartorya fenneliae, and Neosartorya fischeri, were co-hybridized with that of Aspergillus fumigatus Af293 and compared.

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Project description:The effect of cell free supernatant from the antifungal strain Lactobacillus plantarum 16 on the growth of Aspergillus fumigatus Af293 was assessed. Transcriptome analysis of the genome was performed after ten minutes exposure to antifungal supernatant in order to determine the molecular targets involved in inhibtion.

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Project description:Experimental factor: Time after the temperature shift from 30C to 37C or 30C to 48C. Conidia (5x106 /ml) from Aspergillus fumigatus Af293 were incubated in the CM medium for germination (~ 17 hrs) at 30C. The culture was transferred to a water bath of 37C or 48C for continued growth. Samples were taken after the defined time (i.e. 0, 15, 30, 60, 120, and 180 min.).

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Project description:We generated this RNA-seq dataset to investigate the effects of transcription factor ZfpA (aka. AFUA_8G05010 or AFUB_082490) in the gene expression of A. fumigatus strain Af293. One of the major reasons we were interested in investigating ZfpA was because this TF had been identified as highly regulated by the oxylipins (https://pubmed.ncbi.nlm.nih.gov/33056992/). To that end, we collected RNA from spores and the mycelial tissue under three distinct conditions: (a) wild-type ZfpA, (b) ZfpA knocked out, and (c) ZfpA overexpressed. We had four biological replicates for each set of (tissue, condition) pair. Hence, we had a total of (2 tissues * 3 conditions * 4 replicates) = 24 data samples. The knockout samples could still have reads that map to ZfpA due to the fact that less than 100% of the ZfpA gene was deleted.

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