Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Identification of variant distribution in ethanol-selected sRNA libraries

ABSTRACT: Identification of variant distribution in ethanol-selected sRNA libraries

PROVIDER: PRJNA515434 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR8447510.fastq.gz	Fastqsanger.gz
	SRR8447511.fastq.gz	Fastqsanger.gz
	SRR8447502.fastq.gz	Fastqsanger.gz
	SRR8447512.fastq.gz	Fastqsanger.gz
	SRR8447503.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 12

Similar Datasets

Identification of variant distribution in ethanol-selected sRNA libraries

Project description:In this study we subjected a library of synthetic sRNAs to multiple rounds of ethanol selection and analyzed changes in sRNA variant abundance by high-throughput sequencing.

2019-01-22 | GSE125161 | GEO

Replacing reprogramming factors with antibodies selected from autocrine antibody libraries

Project description:Replacing reprogramming factors with antibodies selected from autocrine antibody libraries

| PRJNA422396 | ENA

Mouse cerebellar libraries:Ethanol-treated and controls

Project description:P300 and P720 C57BL6/J male mice were exposed to ethanol vapor (95% w/v) for 3 hours each day for a total of 5 days. Blood alcohol levels in the ethanol treated animals was 3.0mg/ml. Controls at P300 and P720 were included. Keywords: SAGE-dose response All C57BL/6 male mice were sacrificed and the cerebellum was quickly removed. Total RNA was isolated using Trizol. For the creation of the libraries, 40micrograms of total RNA was used. cDNA was synthesized on oligo dt beads. Enzyme: NlaIII Vector: pZERO-I

2006-11-21 | E-GEOD-4520 | biostudies-arrayexpress

Mouse cerebellar libraries:Ethanol-treated and controls

2006-11-22 | GSE4520 | GEO

Differential sRNA regulation in leaves and roots of sugarcane under water depletion

Project description:In order to increase our understanding on the epigenetic regulation in response to abiotic stresses in plants, sRNA regulation in sugarcane plants submitted to drought stress was analyzed. Deep sequencing analysis was carried out to identify the sRNA regulated in leaves and roots of sugarcane cultivars with different drought sensitivities. An enrichment of 22-nt sRNA species was observed in leaf libraries. The pool of sRNA selected allowed the analysis of different sRNA classes (miRNA and siRNA). Twenty eight and 36 families of conserved miRNA were identified in leaf and root libraries, respectively. Dynamic regulation of miRNA was observed and the expression profile of eight miRNA was verified in leaf samples by stem-loop qRT-PCR assay. Altered miRNA regulation was correlated with changes in mRNA levels of specific targets. 22-nt miRNA triggered siRNA-candidates production by cleavage of their targets in response to drought stress. Some genes of sRNA biogenesis were down-regulated in tolerant genotypes and up-regulated in sensitive in response to drought stress. Our analysis contributes to increase the knowledge on the roles of sRNA in epigenetic-regulatory pathways in sugarcane submitted to drought stress.

2012-11-24 | GSE42483 | GEO

RNAseq expression libraries from Mycobacterium abscessus with deletion of the sRNA B11

Project description:RNAseq expression libraries from Mycobacterium abscessus with deletion of the sRNA B11

| PRJNA886436 | ENA

Silencing Dicer-like genes reduces sRNA generation and virulence in Penicillium italicum

Project description:Nine sRNA libraries were prepared and sequenced using Illumina sequencing

2019-10-11 | GSE138683 | GEO

Small RNA (sRNA) sequencing from A. thaliana flowers

Project description:Purpose: To study small RNAs expressed in A. thaliana flowers Methods: sRNA libraries were constructed as previously described (C Lu et al. 2007) and sequenced on an Illumina GAIIx or Illumina HiSeq 2000 instrument at the Delaware Biotechnology Institute. These libraries were prepared between 2010 and 2012.

2018-08-01 | GSE97917 | GEO

Replacing reprogramming factors with antibodies selected from autocrine antibody libraries

Project description:Identification of antibodies with reprogramming activity from combinatorial libraries

2018-12-14 | GSE108068 | GEO

blueberry sRNA

Project description:blueberry sRNA

| PRJEB23596 | ENA