Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Streptomyces jumonjinensis strain:NRRL 5741

ABSTRACT: Streptomyces jumonjinensis strain:NRRL 5741 Genome sequencing and assembly

PROVIDER: PRJNA544339 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other

Items per page:

1 - 1 of 1

Similar Datasets

Streptomyces toyocaensis strain:NRRL 15009

Project description:Streptomyces toyocaensis strain:NRRL 15009 Genome sequencing and assembly

| PRJNA239004 | ENA

Ribosome pausing at the AT-rich codons regulates the protein expression of secondary metabolite gene clusters in the Streptomyces tsukubaensis NRRL 18488

Project description:Streptomyces tsukubaensis NRRL 18488 is the preferred strain for the production of immunosuppressant agent tacrolimus (FK506). To take full advantage of its genetic potential, systematic understanding of secondary metabolism and related regulatory mechanisms is highly demanded. Here, to this end, we complete its 7.9 Mbp linear genome sequence followed by integrating with multi-omics measurements. With accurate reannotation of FK506 gene cluster, total 2,389 transcription start sites were determined by using primary transcriptome analysis. Integrated analysis of transcriptome and translatome data revealed that secondary metabolic gene clusters, especially FK506 cluster, undergo translational control with decrease in translational efficiency according to the growth. Furthermore, we demonstrated that SD motif has little correlation with ribosome pausing but AT-rich codons delay the translational elongation. Strong ribosome pausing was observed in the rare TTA codon in FK506 cluster. This comprehensive genome-scale analysis provides insight to the translational regulation of secondary metabolism in S. tsukubaensis.

2019-10-16 | GSE97637 | GEO

Streptomyces ficellus strain:NRRL 8067

Project description:Streptomyces ficellus strain:NRRL 8067 Genome sequencing

| PRJNA507930 | ENA

Streptomyces tsukubensis strain:NRRL 18488

Project description:Streptomyces tsukubensis strain:NRRL 18488 Genome sequencing

| PRJNA382016 | ENA

Genome-wide binding site profiling of NdgR in Streptomyces coelicolor

Project description:We identified genome-wide binding regions of NdgR in Streptomyces coelicolor using chromatin immunoprecipitation sequencing (ChIP-seq). We constructed 6×myc-tagged NdgR strain using homologous recombination with myc-tagging vector. Analysis of the sequencing data aligned to Streptomyces coelicolor genome database (NC_003888).

2014-12-29 | GSE59010 | GEO

Streptomyces laculatispora strain:NRRL B-24909

Project description:Streptomyces laculatispora strain:NRRL B-24909 Genome sequencing and assembly

| PRJNA707029 | ENA

Streptomyces stelliscabiei strain:NRRL B-24447

Project description:Streptomyces stelliscabiei strain:NRRL B-24447 Genome sequencing and assembly

| PRJNA282837 | ENA

Streptomyces parvus strain:NRRL B-1455

Project description:Streptomyces parvus strain:NRRL B-1455 Genome sequencing and assembly

| PRJNA565123 | ENA

Streptomyces europaeiscabiei strain:NRRL B-24443

Project description:Streptomyces europaeiscabiei strain:NRRL B-24443 Genome sequencing and assembly