Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Abscisic acid transcriptional response of the maize epigenetic mutant, mop1-1

ABSTRACT: Abscisic acid transcriptional response of the maize epigenetic mutant, mop1-1

PROVIDER: PRJNA546250 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR9200720_1.fastq.gz	Fastqsanger.gz
	SRR9200720_2.fastq.gz	Fastqsanger.gz
	SRR9200711_1.fastq.gz	Fastqsanger.gz
	SRR9200711_2.fastq.gz	Fastqsanger.gz
	SRR9200721_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 34

Similar Datasets

Abscisic acid transcriptional response of the maize epigenetic mutant, mop1-1

Project description:MOP1-dependent and ABA-responsive pathways act within complex, connected transcriptional regulatory networks to mediate tissue-specific growth and responses to abiotic stress in maize Purpose: To identify genome-wide ABA-induced, MOP1-dependent and independent transcriptional responses Methods: mRNA profiles of Mop1 wildtype and mop1-1 mutant V3 stage maize seedlings were subjected to ABA and MS treatments for 8 hours. The trimmed sequence reads were analyzed at the gene level using HISAT2, stringite, and edgeR. Results: we mapped ~23 million, 150 bp, paired-end sequence reads per sample to the B73 version 4 maize genome and identified 3,242 genes in four pairwise-comparisons to be differentially expressed genes (DEGs) with a fold change ≥2 and FDR <0.05, 1,561 DEGs were found to be unique to one genotype/treatment comparison. Conclusions: Our study represents the first analysis of ABA in maize seedlings in the RdDM (mop1-1) mutant, with biological replicates, and generated by RNA-seq technology. We identified common targets of MOP1 and ABA transcriptional regulation.

2020-03-22 | GSE132167 | GEO

Abscisic acid effect on wild type and the abh1 mutant

Project description:Analysis of the abh1 mutant Arabidopsis plants following treatment with 50 uM abscisic acid (ABA). ABH1 encodes the large (80kDa) subunit of the nuclear mRNA cap binding complex and affects early ABA signal transduction events (Hugouvieux et al., 2001, Cell 106, 477). Keywords: stress response

2007-03-01 | GSE7112 | GEO

Comparative transcriptome analysis of abscisic acid (ABA) deficient mutant (vp5) and normal maize (Vp5) embryos during seed maturation

Project description:Comparative transcriptome analysis of abscisic acid (ABA) deficient mutant (vp5) and normal maize (Vp5) embryos during seed maturation

| PRJEB49141 | ENA

Comparative transcriptome analysis of abscisic acid (ABA) deficient mutant (vp5) and normal maize (Vp5) embryos during seed maturation

Project description:Identification of key genes and pathways regulated by phytohormone ABA during maize seed maturation, using the ABA synthesis-deficient mutant (vp5) and regular maize (Vp5) developing embryos.

2021-12-02 | E-MTAB-11224 | biostudies-arrayexpress

Expression data from maize D11 mutant

Project description:The expression profiling of a newly identified maize dwarf mutant Dwarf11 (D11) was investigated by Affymetrix array. Results showed that transcripts encoding GA biosynthetic and catabolic enzymes ent-kaurenoic acid oxidase (KAO), GA 20-oxidase (GA20ox), and GA 2-oxidase (GA2ox) were up-regulated in the D11 mutant. We used microarrays to identify the difference of GA-related gene expression in D11 mutant.

2013-04-25 | GSE46370 | GEO

RNA-seq analysis of Arabidopsis treated with abscisic acid (ABA) and its derivatives

Project description:Transcriptome of chemical-treated plants were investigated for the evaluation of ABA derivatives. Abscisic acid and its derivatives up-regulated mainly abiotic stress responsive genes.

2020-03-01 | GSE127910 | GEO

Arabidopsis Response to Abscisic Acid Regulate RNA NAD+-Capping

Project description:Arabidopsis Response to Abscisic Acid Regulate RNA NAD+-Capping

| PRJNA596797 | ENA

Abscisic acid (ABA) application to Populus × canescens in hydroponics

Project description:Abscisic acid (ABA) application to Populus × canescens in hydroponics

| PRJEB30670 | ENA

Transcriptome analysis of Arabidopsis low molecular weight protein phosphatase mutant aph in response to Abscisic acid

Project description:Transcriptome analysis of Arabidopsis low molecular weight protein phosphatase mutant aph in response to Abscisic acid

| PRJNA774997 | ENA

Transcriptome analysis of Arabidopsis thaliana G protein subunit mutants in response to abscisic acid (ABA)

Project description:Heterotrimeric G proteins mediate crucial and diverse signaling pathways in eukaryotes. To gain insights into the regulatory modes of the G protein and the co-regulatory modes of the G protein and the stress hormone abscisic acid (ABA), we generated and analyzed gene expression in G protein subunit single and double mutants of the model plant Arabidopsis thaliana. Through a Boolean modeling approach, our analysis reveals novel modes of heterotrimeric G protein action. Keywords: transcriptome analysis; G protein subunit mutants; abscisic acid (ABA)

2010-12-06 | GSE19520 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data