Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Halopiger xanaduensis SH-6

ABSTRACT: Halopiger xanaduensis SH-6 genome sequencing project

PROVIDER: PRJNA56049 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR071405_1.fastq.gz	Fastqsanger.gz
	SRR071405_2.fastq.gz	Fastqsanger.gz
	SRR3927374_1.fastq.gz	Fastqsanger.gz
	SRR3927374_2.fastq.gz	Fastqsanger.gz
	GCA_000217715.1_sequence_report.txt	Txt

Items per page:

1 - 5 of 5

Similar Datasets

Halopiger

Project description:Halopiger sp. overview

| PRJNA208282 | ENA

Halopiger sp. AArc-T1

Project description:Halopiger sp.nov.AArc-T1 genome sequencing

| PRJNA331766 | ENA

Halopiger aswanensis strain:dsm 13151

Project description:Halopiger aswanensis DSM 13151 genome sequencing

| PRJNA303707 | ENA

Methanobrevibacter wolinii SH strain:SH

Project description:Methanobrevibacter wolinii SH strain:SH Genome sequencing and assembly

| PRJNA223477 | ENA

Effect of DDX5/DDX17 on genome-wide RNA Polymerase II distribution in SH-SY5Y cells

Project description:This project includes ChIP of total RNA pol II in human SH-SY5Y neuroblastoma cells following the joint depletion of RNA helicases DDX5 and DDX17 to determine the genome-wide effect of DDX5/DDX17 on RNA Pol II distribution.

2022-09-21 | GSE157850 | GEO

Complete genome sequence of Halopiger xanaduensis type strain (SH-6(T)).

Project description:Halopiger xanaduensis is the type species of the genus Halopiger and belongs to the euryarchaeal family Halobacteriaceae. H. xanaduensis strain SH-6, which is designated as the type strain, was isolated from the sediment of a salt lake in Inner Mongolia, Lake Shangmatala. Like other members of the family Halobacteriaceae, it is an extreme halophile requiring at least 2.5 M salt for growth. We report here the sequencing and annotation of the 4,355,268 bp genome, which includes one chromosome and three plasmids. This genome is part of a Joint Genome Institute (JGI) Community Sequencing Program (CSP) project to sequence diverse haloarchaeal genomes.

| S-EPMC3368405 | biostudies-literature

SNP array of human neuroblastoma cell lines SH-SY5Y, SH-EP and SK-N-SH

Project description:TERT promoter muatations occur frequently in tumors of various origin. We here accessed the frequency of TERT pomoter mutations in 131 human primary neuroblastomas and 20 human neuroblastoma cell lines. No TERT promoter mutations were found in the 131 primary neuroblastomas. However, in the three cell lines SH-SY5Y, SH-EP and SK-N-SH a TERT promoter mutation was detected. Sanger sequencing indicated a homozygous mutation. To confirm loss of heterozygosity (LOH) we performed Affymetrix CytoScanHD SNP arrays. Indeed LOH could be confirmed. SNP arry experiments were performed according to the standard protocol for Affymetrix CytoScanHD arrays (Affymetrix, Santa Clara). Briefly, a 250 ng sample of genomic DNA was digested with NspI, ligated to adaptors, amplified by PCR, fragmented and biotin-labeled. The labeled samples were hybridized to Affymetrix CytoscanHD arrays, followed by washing, staining and scanning in the Affymetrix GeneChip Scanner 3000. Analysis was performed using the Affymetrix Chromosome Analysis Suite v2.1.

2015-03-03 | E-GEOD-66422 | biostudies-arrayexpress

SNP array of human neuroblastoma cell lines SH-SY5Y, SH-EP and SK-N-SH

2015-03-03 | GSE66422 | GEO

Bacillus pumilus strain:SH-9 | isolate:SH-9

Project description:Bacillus pumilus strain:SH-9 | isolate:SH-9 Genome sequencing

| PRJNA1056679 | ENA

Sphingobacteriaceae bacterium strain:SH-48

Project description:SH-48 Genome sequencing

| PRJNA407004 | ENA