Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Genomic characterization of USDA-NPGS Sudanese sorghum core collection

PROVIDER: PRJNA565973 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR10140100.fastq.gz	Fastqsanger.gz
	SRR10140200.fastq.gz	Fastqsanger.gz
	SRR10140300.fastq.gz	Fastqsanger.gz
	SRR10140101.fastq.gz	Fastqsanger.gz
	SRR10140201.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 318

Similar Datasets

Project description:Genomic characterization of a core set of the USDA-NPGS Ethiopian sorghum germplasm collection

| PRJNA488736 | ENA

Project description:Genomic characterization of USDA-NPGS Sweet sorghum diversity panel.

| PRJNA1076005 | ENA

Project description:Whole genome re-sequencing of rice USDA mini-core collection

| PRJNA792623 | ENA

Project description:Flax core collection

| PRJNA707038 | ENA

Project description:Korean wheat core collection

| PRJEB60428 | ENA

Identification of non-coding RNA in sweet sorghum under salt stress

Project description:Salt stress has become one of the main abiotic stress factors restricting agricultural production worldwide. Sweet sorghum is an important salt and drought tolerant feed and energy crop. Its salt tolerance mechanism has not been widely studied. With the development of transcriptome sequencing technology, it is possible to study the molecular mechanism of sweet sorghum salt tolerance. The purpose of this study was to further reveal the potential salt-tolerant molecular mechanisms of sweet sorghum through high-throughput sequencing analysis of the transcriptome. Finally, through high-throughput sequencing, we read approximately 54.4G of raw base and 53.7G of clean base in total, and used FastQC to assign a quality score (Q) to each base in the read using a similar phred algorithm, Analysis shows that the data is highly credible. We conclude that RNA-based transcriptome characterization will accelerate the study of genetics and molecular biology of sweet sorghum salt tolerance mechanisms and provide a framework for this.

2020-03-19 | GSE145748 | GEO

Project description:Phenotypic and genotypic characterization of Sudanese goat breeds

| PRJNA683771 | ENA

Project description:Phenotypic and genotypic characterization of Sudanese goat breeds

| PRJEB32692 | ENA

Gene expression of sorghum-specific Exserohilum turcicum strain

Project description:Exserohilum turcicum is a fungal pathogen that causes northern corn leaf blight and sorghum leaf blight. However, strains are host-specific, meaning a strain typically only causes disease on either maize or sorghum. This pathosystem provides a unique opportunity to identify the mechanisms underlying host specificity through genomic and transcriptomic studies. To characterize host specificity, we (i) constructed de novo annotated assemblies of one sorghum- (15St008) and one maize-specific (Et52B) E. turcicum strain, ii) identified and characterized structural changes between the two genomes, and (iii) compared differential gene expression. This GEO project contains the gene expression of the sorghum-specific strain (15St008) during in planta infection of sorghum and in axenic cultures.

2025-01-31 | GSE282460 | GEO

Project description:Phenotypic and genotypic characterization of Sudanese goat breeds 2

| PRJEB42077 | ENA