Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Sphingopyxis alaskensis strain:BT1 13.2

ABSTRACT: Sphingopyxis alaskensis strain:BT1 13.2 Genome sequencing and assembly

PROVIDER: PRJNA587048 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR10382427_1.fastq.gz	Fastqsanger.gz
	SRR10382427_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 2 of 2

Similar Datasets

Sphingopyxis alaskensis

Project description:Sphingopyxis alaskensis overview

| PRJNA35711 | ENA

Blastocystis sp. BT1 isolate:BT1

Project description:Blastocystis sp. BT1 isolate:BT1 Genome sequencing

| PRJNA1084775 | ENA

Differential RNA-Seq (dRNA-seq) data from Sphingopyxis granuli strain TFA grown in two different carbon sources and RNA-seq from Hfq-coIP experiment.

Project description:We performed differential RNA-sequencing (dRNA-seq) experiments in both minimal medium (MM) plus β-hydroxybutyrate (β-HB) and MM plus tetralin (THN) of Sphingopyxis granuli strain TFA. The objective was mapping the Transcription Start Site (TSS) of each gene in the genome in both conditions, detecting non-coding RNAs (ncRNAs) and comparing the gene expression profile in a preferential carbon source (β-HB) versus tetralin (an aromatic pollutant). The dRNA-seq technique consists of using a termination exonuclease (TEX) to allow the discrimination of primary and processed transcripts. Furthermore, to detect Hfq-bound RNAs we co-immunoprecipitated RNA from the wild type strain (negative control) and a TFA strain with an Hfq-3xFlag tagged version (MPO501 strain) using an anti-3xFlag antibody and performed RNA-sequencing from the precipitated RNA.

2018-08-14 | GSE111181 | GEO

Pseudomonas aeruginosa strain:BT1 2.2

Project description:Pseudomonas aeruginosa strain:BT1 2.2 Genome sequencing and assembly

| PRJNA586721 | ENA

Bibersteinia trehalosi strain:OADDL-BT1

Project description:Bibersteinia trehalosi strain:OADDL-BT1 Genome sequencing and assembly

| PRJNA507647 | ENA

Rhizorhabdus histidinilytica strain:BT1 5.2

Project description:Rhizorhabdus histidinilytica strain:BT1 5.2 Genome sequencing and assembly

| PRJNA586745 | ENA

Achromobacter xylosoxidans strain:BT1 10.2

Project description:Achromobacter xylosoxidans strain:BT1 10.2 Genome sequencing and assembly