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Transcriptomics of xylem from a Populus deltoides population

ABSTRACT: Transcriptomics of xylem from a Populus deltoides population

PROVIDER: PRJNA589026 | ENA |

REPOSITORIES: ENA

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			Action	DRS
	SRR10433300_1.fastq.gz	Fastqsanger.gz
	SRR10433300_2.fastq.gz	Fastqsanger.gz
	SRR10433400_1.fastq.gz	Fastqsanger.gz
	SRR10433400_2.fastq.gz	Fastqsanger.gz
	SRR10433500_1.fastq.gz	Fastqsanger.gz

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Transcriptomics of xylem from a Populus deltoides population

Project description:We sequenced the xylem transcriptome from a population of unrelated individuals of P. deltoides to uncover a master regulator of lignin biosynthesis. Grant ID: IOS-1444543 Grant Title: Genome and transcriptome based prediction, and regulator inference, o molecular and whole-plant phenotypes. Funding source: NSF Plant Genome Research Program.

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Gene expression in leaves of a Populus trichocarpa and Populus deltoides pseudo-backcross population

Project description:A microarray analysis of whole-genome gene expression in leaves was carried out in a (Populus trichocarpa X Populus deltoides) X Populus deltoides pseudo-backcross pedigree. Genetic variation in gene expression was quantified for 55,793 predicted gene models based on a single probe per gene. Resultant data contributed to the analysis of the genetic architecture of gene expression in leaves of Populus. Data include one biological replicate of 183 individuals segregating from a pseudo-backcross pedigree of (Populus trichocarpa X Populus deltoides) X Populus deltoides analyzed for gene expression (GE) in roots using one probe per gene for 55793 independent gene models (probes E_POPLARSxxxxxPxxxxx) and single feature sequence polymorphism (SFP) using one probe per gene for 12084 independent gene models (probes G_POPLARSxxxxxPxxxxx). GE and SFP probes were selected from 6-7 probes per gene previously tested in a pilot study of the two parent trees of the cross (Populus deltoides X Populus trichocarpa)

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