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Litopenaeus vannamei

ABSTRACT: microbial community diversity

PROVIDER: PRJNA600113 | ENA |

REPOSITORIES: ENA

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Dataset's files

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			Action	DRS
	SRR10861522.fastq.gz	Fastqsanger.gz
	SRR10861523.fastq.gz	Fastqsanger.gz
	SRR10861524.fastq.gz	Fastqsanger.gz
	SRR10861525.fastq.gz	Fastqsanger.gz
	SRR10861526.fastq.gz	Fastqsanger.gz

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Microbiota from Litopenaeus vannamei: digestive tract microbial community of Pacific white shrimp (Litopenaeus vannamei).

Project description:Bacteria capable of producing different extracellular enzymes of potential relevance in digestive processes were isolated from the stomach, hepatopancreas and intestine of Pacific white shrimp Litopenaeus vannamei. A total of 64 strains with proteolytic activity were isolated and grouped into 16 clusters based on morphological characteristics: 4 groups were isolated from the intestine; 5 from the hepatopancreas; and 7 from the stomach. Molecular methods (16S rRNA gene amplification and sequencing) and phenotypic criteria (Gram stain, catalase and oxidase tests, cell and colony morphology) were used to identify strains, which corresponded to Pseudoalteromonas and Vibrio genera. These genera are reported to form part of the digestive tract microbial community in shrimp. Both genera were isolated from all three tested tissues. One member of each morphologic group was selected for analysis of the presence of amylases, lipases/esterases and chitinases. Most of the strains had all the tested enzymes, indicating that the L. vannamei digestive tract microbiotic flora includes groups which have the potential to contribute to the degradation of dietary components.

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