Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

RNA-Seq of circCDYL knockdown (KD) samples in HepG2, J82, and UMUC3 cells and of GRWD1, IGF2BP1, and IGF2BP2 knockdown (KD) samples in J82 and UMUC3 cells

ABSTRACT: RNA-Seq of circCDYL knockdown (KD) samples in HepG2, J82, and UMUC3 cells and of GRWD1, IGF2BP1, and IGF2BP2 knockdown (KD) samples in J82 and UMUC3 cells

PROVIDER: PRJNA611768 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR11281600.fastq.gz	Fastqsanger.gz
	SRR11281601.fastq.gz	Fastqsanger.gz
	SRR11281602.fastq.gz	Fastqsanger.gz
	SRR11281603.fastq.gz	Fastqsanger.gz
	SRR11281604.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 144

Similar Datasets

RNA-Seq of circCDYL knockdown (KD) samples in HepG2, J82, and UMUC3 cells and of GRWD1, IGF2BP1, and IGF2BP2 knockdown (KD) samples in J82 and UMUC3 cells

Project description:We profile gene expression upon circCDYL KD in HepG2 cells and in two bladder cancer cell lines J82 and UMUC3 as well as upon knockdown of the RNA binding proteins (RBP) GRWD1, IGF2BP1, and IGF2BP2 in J82 and UMUC3

2020-11-11 | GSE146726 | GEO

RNA-Seq of circHIPK3 knockdown (KD) samples in UMUC3 and J82

Project description:We profile gene expression upon circHIPK3 KD in two bladder cancer cell lines UMUC3 and J82

2021-10-01 | GSE148824 | GEO

RNA-Seq of circHIPK3 knockdown (KD) samples in UMUC3 and J82

Project description:RNA-Seq of circHIPK3 knockdown (KD) samples in UMUC3 and J82

| PRJNA625910 | ENA

Expression data from human immortalized urothelial cell SV-HUC-1 and four Bladder cancer cells (5637, UMUC3, T24, and J82)

Project description:To uncover the dysregulated genes in BCa, we performed the RNA-seq to detect the gene expression levels in four BCa cells (5637, UMUC3, T24, and J82) and human immortalized urothelial cell SV-HUC-1. To search for the differentially expressed genes of for cell lines (5637, J82, UMUC3, and T24) compared to the normal cell line SV-HUC-1.

2024-04-28 | GSE231383 | GEO

Gene expression profile changes after ANLN knockdown in J82 cells

Project description:To investigate gene expression profile changes after ANLN knockdown, we have employed whole genome microarray expression profiling as a discovery platform to identify genes that altered after ANLN knockdown, so as to explore the potential function of ANLN. Bladder cancer cell line J82 was knocked down by using small interfering RNA (siRNA) or control siRNA 24, 48 and 72 hours, respectively.

2017-02-24 | GSE81629 | GEO

RNA-Seq of circSLC38A1 knockdown (KD) samples in T24 cells

Project description:RNA-Seq of circSLC38A1 knockdown (KD) samples in T24 cells

| PRJNA773043 | ENA

In vivo transcriptome profiling of control and GANAB-KD UMUC3 bladder carcinoma cells

Project description:In vivo transcriptome profiling of control and GANAB-KD UMUC3 bladder carcinoma cells

| PRJNA688703 | ENA

In vivo transcriptome profiling of control and GANAB-KD UMUC3 bladder carcinoma cells [bulk]

Project description:In vivo transcriptome profiling of control and GANAB-KD UMUC3 bladder carcinoma cells [bulk]

| PRJNA688702 | ENA

J82 human bladder cell line treated with frankincense oil

Project description:Frankincense oil is prepared from aromatic hardened wood resin obtained by tapping Boswellia trees. For thousands of years, it has been important both socially and economically as an ingredient in incense and perfumes. Frankincense oil is a botanical oil distillate made from fermented plants that contains boswellic acid, a component known to have anti-neoplastic properties. We evaluated frankincense oil-induced cytotoxicity in bladder cancer cells. With a window of concentration, frankincense oil suppressed cell viability and induced cytotoxicity in bladder transitional carcinoma J82 cells but not normal bladder urothelial UROtsa cells immortalized with SV40 large T antigen. However, frankincense oil-induced J82 cell death did not result in DNA fragmentation. Microarray and bioinformatics analysis confirmed that frankincense oil activated cell cycle arrest, suppressed cell proliferation, and activated apoptosis in J82 cells through a series of potential pathways. These finding suggest that bladder cancer can be treated through intravesical administration of pharmaceutical agents similar to direct application on melanoma. 2E05 J82 cells were untreated or treated with a 1/1000 dilution of frankincense oil for 0.5, 1, 2, or 3 hours prior to RNA extraction.

2009-02-09 | E-GEOD-14002 | biostudies-arrayexpress

RNA-Seq of circSLC38A1 knockdown (KD) samples in T24 cells

Project description:We profile gene expression upon circSLC38A1 KD in bladder cancer cell lines T24

2022-10-01 | GSE186226 | GEO