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Transcriptomic analysis of Streptococcus suis in response to ferrous iron and cobalt toxicity

ABSTRACT: Transcriptomic analysis of Streptococcus suis in response to ferrous iron and cobalt toxicity

PROVIDER: PRJNA643997 | ENA |

REPOSITORIES: ENA

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			Action	DRS
	SRR12143889_1.fastq.gz	Fastqsanger.gz
	SRR12143889_2.fastq.gz	Fastqsanger.gz
	SRR12143890_1.fastq.gz	Fastqsanger.gz
	SRR12143890_2.fastq.gz	Fastqsanger.gz
	SRR12143891_1.fastq.gz	Fastqsanger.gz

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Transcriptomic analysis of Streptococcus suis in response to ferrous iron and cobalt toxicity

Project description:We explored the transcriptome change of Streptococcus suis in the presence of ferrous iron and cobalt by RNA sequencing. The data revealed that expression of a lot of genes was altered to respond to ferrous iron and cobalt toxicity. Moreover, most of the genes differentially expressed in response to cobalt are the same as those in response to ferrous iron.

2020-07-04 | GSE153766 | GEO

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Project description:transcriptomic study of the impact of iron toxicity on rice plant (Oryza sativa L.; cv M-bM-^@M-^XI Kong PaoM-bM-^@M-^Y ) after short term (3 days) or long term (3 weeks) exposure to ferrous iron (125 ppm). Twenty five days old rice seedlings were exposed to 0 or 125 mg/L ferrous iron for 3 days and 3 weeks in hydroponic culture. Comparison between control and iron stressed plants were done at the shoot and the root levels. The assays were replicated twice on two independent plant cultures. 8 samples, Two-condition experiment, control (0 ppm ferrous iron) vs. iron treated (125 ppm ferrous iron). Biological replicates: 2 replicates for comparison shoot 3 days of stress, root 3 days of stress, shoot 3 weeks of stress and root 3 weeks of stress.

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Transcriptomic study of the impact of iron toxicity on rice plant

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Project description:Streptococcus suis is an important zoonotic pathogen that can cause meningitis and sepsis in both pigs and humans. In this study,we evaluated the genetic difference of 40 Streptococcus suis strains belonging to various sequence types by comparative genomic hybridization to identify genes associated with the variation in pathogenicity using NimbleGen’s tilling microarray platform. Application of Comparative Phylogenomics to Identify Genetic Differences Relating to Pathogenicity of Streptococcus suis

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