Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Microbial eukaryotic 18S v4 region amplicon

PROVIDER: PRJNA646537 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR12241400.fastq.gz	Fastqsanger.gz
	SRR12241401.fastq.gz	Fastqsanger.gz
	SRR12241402.fastq.gz	Fastqsanger.gz
	SRR12241403.fastq.gz	Fastqsanger.gz
	SRR12241404.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 47

Similar Datasets

Project description:Microbial eukaryotic 18S V4 amplicon and prokaryotic 16S V4 amplicon

| PRJNA777784 | ENA

Project description:Microbial prokaryotic 16S V4 amplicon and microbial eukaryotic 18S V4 amplicon

| PRJNA848776 | ENA

Project description:Microbial prokaryotic 16S V4 amplicon and microbial eukaryotic 18S V4 amplicon in Lake Donghu

| PRJNA848972 | ENA

Microeukaryotes

Project description:Microeukaryotes from Xiamen urban parks from 18S V4 region amplicon

| PRJNA757135 | ENA

Project description:Pollevann Sediment 18S V4 Amplicon

| PRJEB24888 | ENA

Project description:Bunnefjorden Sediment 18S V4 Amplicon

| PRJEB24876 | ENA

Project description:Drobak Sediment 18S V4 Amplicon

| PRJEB24158 | ENA

Metabarcoding in the middle delta of Paraná River, Argentina, reveals novel diversity of early-branching Fungi and unicellular holozoans

Project description:Metabarcoding analysis of 18S eukaryotic diversity in the Paraná River, Argentina (V4 region)

| PRJEB23471 | ENA

Protist metagenomics in New York City

Project description:18S rRNA gene V4 region amplicon sequencing of protists in NYC environmental samples

| PRJEB23950 | ENA

Hhigh-throughput sequencing of in vitro fecal fermentation samples

Project description:We report the use of high-throughput sequencing technology to detect the microbial composition and abundance of mice grastic contents before and after Helicobacter pylori infection or Lactobacillus paracasei ZFM54 pretreatment/treatment. The genomic DNA was obtained by the QIAamp PowerFecal DNA Kit. Then, the DNA samples were sent to BGI Genomics Co., Ltd. (Shenzhen, China) for V3-V4 region of the 16S rRNA gene high-throughput sequencing with an Illumina MiSeq platform. DNA samples were sequenced using primers 338F (forward primer sequence ACTCCTACGGGAGGCAGCAG)-806R (reverse primer sequence GGACTACHVGGGTWTCTAAT). The sequencing analyses were carried out using silva138/16s database as a reference for the assignation of Amplicon Sequence Variant (ASV) at 100% similarity.

2022-07-27 | GSE208665 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data