Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Tuber canaliculatum strain:GB_Tcana1

ABSTRACT: Tuber canaliculatum GB_Tcana1 Standard Draft genome sequencing

PROVIDER: PRJNA655101 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR12605082_subreads.fastq.gz	Fastqsanger.gz
	SRR12605083_subreads.fastq.gz	Fastqsanger.gz
	SRR12605084_subreads.fastq.gz	Fastqsanger.gz

Items per page:

1 - 3 of 3

Similar Datasets

Tuber gibbosum strain:GB_Tgibb2

Project description:Tuber gibbosum GB_Tgibb2 Standard Draft genome sequencing

| PRJNA697202 | ENA

Tuber melosporum strain:TBD1

Project description:Tuber melosporum TBD1 Standard Draft genome sequencing

| PRJNA619579 | ENA

Bisulfite-Seq and RNA-seq profiling of truffle (Tuber melanosporum)

Project description:We investigated the ascomycete truffle Tuber melanosporum exploits DNA methylation and transcription to cope with the more than 45,000 repeated elements that are present in its genome. Whole-genome bisulfite sequencing and RNA-sequencing, were performed on different developmental stages of this symbiotic hypogeous fungus -fruitbody (FB), free-living mycelium (FLM), and ectomycorrhiza.

2014-01-01 | GSE49700 | GEO

Potato tuber development

Project description:An in vivo and in vitro potato tuber development gene expression study. Keywords: Developmental stage analysis, time course

2007-07-18 | GSE5360 | GEO

The transcriptome landscape of Tuber magnatum

Project description:Illumina HiSeq technology was used to generate mRNA profiles from Tuber magnatum truffles, free-living mycelium and oak mycorrhizal root tips. Paired-end reads of 100 bp were generated and aligned to Tuber magnatum reference transcripts using CLC Genomics Workbench 9.

2018-11-01 | GSE116692 | GEO

Tuber borchii strain:Tbo3840

Project description:Tuber borchii Tbo3840 Genome sequencing and assembly

| PRJNA384613 | ENA

Tuber melanosporum gene expression in different tissues

Project description:The Transcriptome of different tissues and developmental stages of Tuber melanosporum was analyzed. The array probes were designed from gene models taken from the French Genoscope - Centre National de Séquençage Tuber melanosporum genome sequence version 1. One aim of this study was to verify the expression of the automatically annotated gene models in various tissues and to use this transcriptional information to confirm, to correct or to reject gene models. Another goal was to identify tissue-specific gene expression, e.g. mycorrhiza up-regulated transcripts or fruiting body up-regulated transcripts for further detailed analyses.

2010-04-01 | GSE17529 | GEO

Effect of potato tuber bruising on gene expression 2h after mechanical shock in tetraploid potato genotypes

Project description:Tuber bruising in tetraploid potatoes (Solanum tuberosum) is a trait of economical importance, as it affects tubers' fitness for sale. Understanding the genetic components affecting tuber bruising is a key step in developing potato lines with increased resistance to bruising. As the tetraploid setting renders genetic analyses more complex, there is still a lot to learn about this complex phenotype. Here, we used genotype by sequencing data on a panel of half-sibling populations from a breeding programme to perform a genome-wide association analysis for tuber bruising. In addition, we collected transcriptomics data to enrich the GWAS results, by performing a differential expression analysis between samples with high- and low-bruising susceptibility.

2022-11-29 | GSE208439 | GEO

Tuber indicum strain:tin1

Project description:Tuber indicum strain:tin1 Genome sequencing and assembly

| PRJNA542762 | ENA

Tuber indicum strain:Tubin_1

Project description:Tuber indicum strain:Tubin_1 Genome sequencing and assembly

| PRJNA633038 | ENA