Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Salmo salar

ABSTRACT: miRNA expression study in liver of Salmo salar during smoltification and seawater transfer

PROVIDER: PRJNA665200 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR13059600.fastq.gz	Fastqsanger.gz
	SRR13059601.fastq.gz	Fastqsanger.gz
	SRR13059602.fastq.gz	Fastqsanger.gz
	SRR13059603.fastq.gz	Fastqsanger.gz
	SRR13059604.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 42

Similar Datasets

Salmo salar

Project description:miRNA expression study in gill of Salmo salar during smoltification and seawater transfer

| PRJNA681317 | ENA

Salmo salar

Project description:miRNA expression study in Salmo salar during smoltification and sea water transfer

| PRJNA556577 | ENA

RNA-seq of Atlantic salmon (Salmo salar) liver sampled at various stages through smoltification

Project description:The anadromous Atlantic salmon undergo preparatory physiological transformations before seawater entry, referred to as smoltification. Little is known about the photoperiod-influence and genome regulatory processes driving smoltification such as the large scale changes in lipid metabolism and energy homeostasis in the developing smolt liver. To shed light on this, we performed a smoltification trial using contrasting photoperiod regimes and generate a transcriptome data from livers throughout smoltification and after seawater transfer. In this experiment two groups of Atlantic salmon were reared for a total of 46 weeks from the parr stage, through smoltification, and seawater transfer. After 21 week from first feeding, the experiment group was given artificial winter photoperiod (8 hours light, 16 hours dark) for 8 weeks to induce smoltification before returning to constant light. The second control group received constant light throughout the experiment. Liver tissue was sampled from individuals first at week 1, 21 weeks after first feeding, then again at week 10, after the winter period, at week 19, after the expected smoltification time, and lastly at week 25, after transfer to seawater.

2022-05-16 | E-MTAB-11746 | biostudies-arrayexpress

ATAC-seq of Atlantic salmon (Salmo salar) liver sampled at various stages through smoltification

Project description:The anadromous Atlantic salmon undergo preparatory physiological transformations before seawater entry, referred to as smoltification. Little is known about the photoperiod-influence and genome regulatory processes driving smoltification such as the large scale changes in lipid metabolism and energy homeostasis in the developing smolt liver. To shed light on this, we performed a smoltification trial using contrasting photoperiod regimes and generate ATAC-seq data from livers throughout smoltification and after seawater transfer to assess the differences in chromatin accessibility. In this experiment Atlantic salmon were reared for a total of 46 weeks from the parr stage, through smoltification, and seawater transfer. After 21 week from first feeding, the group was given artificial winter photoperiod (8 hours light, 16 hours dark) for 8 weeks to induce smoltification before returning to constant light. Liver tissue was sampled from individuals first at week 1, 21 weeks after first feeding, then again at week 10, after the winter period, at week 19, after the expected smoltification time, and lastly at week 25, after transfer to seawater.

2024-02-02 | E-MTAB-13743 | biostudies-arrayexpress

The farmed Atlantic salmon (Salmo salar) skin-mucus proteome

Project description:Norway is the largest producer and exporter of farmed Atlantic salmon (Salmo salar) worldwide. Skin disorders correlated with bacterial infections represent an important challenge for fish farmers due to the economic losses caused. Little is known about this topic, thus studying the skin-mucus of Salmo salar and its bacterial community depict a step forward in understanding fish welfare in aquaculture. In this study, we used label free quantitative mass spectrometry to investigate the skin-mucus proteins associated with both Atlantic salmon and bacteria. In addition, the microbial temporal proteome dynamics during 9 days of mucus incubation with sterilized seawater was investigated, in order to evaluate their capacity to utilize mucus components for growth in this environment.

2019-07-15 | PXD008838 | Pride

Salmo salar

Project description:Salmo salar: Liver slice culture

| PRJNA288080 | ENA

Salmo salar

Project description:miRNA expression changes in Salmo salar macrophages

| PRJNA555192 | ENA

Salmo salar

Project description:Salmo salar

| PRJNA1079995 | ENA

Salmo salar

Project description:Salmo salar Transcriptome