Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Pseudomonas gregormendelii strain:LMG 28632

ABSTRACT: Pseudomonas gregormendelii strain:LMG 28632 Genome sequencing and assembly

PROVIDER: PRJNA668380 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other
	JADEVO01.dat.gz	Other
	JADEVO01.fasta.gz	Fasta.gz
	JADEVO01.master.dat	Other

Items per page:

1 - 4 of 4

Similar Datasets

Transcriptome profiling reveals the EanI/R quorum sensing regulon in Pantoea ananatis LMG 2665T

Project description:Background: Pantoea ananatis LMG 2665T synthesizes and utilizes acyl homoserine lactones (AHLs) for signaling. In this strain, short chain AHLs (C4 to C8) are produced by the EanI/R quorum sensing (QS) system that is involved in pathogenicity and biofilm formation. The complete set of genes regulated by the EanI/R system in P. ananatis LMG 2665T is still not fully known. In the present study, RNA-seq was used to analyze the transcriptome profiles controlled by the EanI/R system in this strain by comparing the wild type strain and its QS mutant 2665T ean∆I/R during lag and log stages. The RNA seq data was validated by RT qPCR. Results: The results showed that the EanI/R regulon in P. ananatis LMG 2665T comprised 144 genes, constituting 3.3% of the whole transcriptome under the experimental conditions in this study. The majority of genes regulated by the EanI/R system included genes for flagella assembly, bacterial chemotaxis, pyruvate metabolism, two component system, metabolic pathways, microbial metabolism and biosynthesis of secondary metabolites. Conclusions: This is the first study to identify the EanI/R QS regulon in P. ananatis LMG 2665T. Functional analysis of genes regulated the EanI/R system in LMG 2665T could help unveil genes that play a vital role in pathogenesis and survival strategies of this pathogen.

2018-10-31 | GSE87207 | GEO

Pseudomonas trivialis strain:LMG 21464

Project description:Pseudomonas trivialis strain:LMG 21464 Genome sequencing and assembly

| PRJNA338684 | ENA

Pseudomonas azotoformans strain:LMG 21611

Project description:Pseudomonas azotoformans strain:LMG 21611 Genome sequencing and assembly

| PRJNA338491 | ENA

Pseudomonas costantinii strain:LMG 22119

Project description:Pseudomonas costantinii strain:LMG 22119 Genome sequencing and assembly

| PRJNA338492 | ENA

Pseudomonas aeruginosa strain:LMG 1272

Project description:Pseudomonas aeruginosa strain:LMG 1272 Genome sequencing and assembly

| PRJNA552675 | ENA

Pseudomonas thivervalensis strain:LMG 21626

Project description:Pseudomonas thivervalensis strain:LMG 21626 Genome sequencing and assembly

| PRJNA298287 | ENA

Pseudomonas poae strain:LMG 21465

Project description:Pseudomonas poae strain:LMG 21465 Genome sequencing and assembly

| PRJNA338673 | ENA

Pseudomonas extremorientalis strain:LMG 19695

Project description:Pseudomonas extremorientalis strain:LMG 19695 Genome sequencing and assembly

| PRJNA338696 | ENA

Pseudomonas coronafaciens strain:LMG 5060

Project description:Pseudomonas coronafaciens strain:LMG 5060 Genome sequencing and assembly

| PRJNA264904 | ENA

Pseudomonas palleroniana strain:LMG 23076

Project description:Pseudomonas palleroniana strain:LMG 23076 Genome sequencing and assembly

| PRJNA445872 | ENA

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data