Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ChAP-seq analysis to identify GoxR binding sites

ABSTRACT: ChAP-seq analysis to identify GoxR binding sites

PROVIDER: PRJNA670347 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR12855463_1.fastq.gz	Fastqsanger.gz
	SRR12855463_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 2 of 2

Similar Datasets

ChAP-seq analysis to identify GoxR binding sites

Project description:Gene expression in the obligatory aerobic acetic acid bacterium Gluconobacter oxydans was shown to respond to oxygen limitation, but the regulators involved are unknown. In this study, we analyzed the function of a transcriptional regulator named GoxR, which belongs to the FNR family. Here, we applied ChAP-seq analysis with a strep-tagged GoxR version to identify binding sites of this regulator in the genome of G. oxydans.

2021-03-11 | GSE159734 | GEO

Identify genome-wide binding sites of GFI1 in NB4 cells

Project description:Identify genome-wide binding sites of GFI1 in NB4 cells

| PRJNA645697 | ENA

ChIP-seq of Mycobacterium smegmatis PafBC to identify in vivo binding sites

Project description:ChIP-seq of Mycobacterium smegmatis PafBC to identify in vivo binding sites

| PRJEB24981 | ENA

Methylation profiling of C.elegans to identify CEH-60/PBX binding sites

Project description:Methylation profiling of C.elegans to identify CEH-60/PBX binding sites

| PRJEB40286 | ENA

ChIP-seq of Myxococcus xanthus to identify CdbA DNA binding sites in vivo

Project description:ChIP-seq of Myxococcus xanthus to identify CdbA DNA binding sites in vivo

| PRJEB35484 | ENA

ChIP-Seq analysis of PPARγ binding sites in iNKT cells

Project description:ChIP-Seq analysis of PPARγ binding sites in iNKT cells

| PRJNA545303 | ENA

ChIP-Seq analysis of SMARCA4 binding sites in human NSC

Project description:ChIP-Seq analysis of SMARCA4 binding sites in human NSC

| PRJNA515001 | ENA

Global analysis of binding sites of SF3B1 by CLIP-seq

Project description:Global analysis of binding sites of SF3B1 by CLIP-seq

| PRJNA923680 | ENA

Chromatin immunoprecipitation of Bacillus subtilis to identify Noc protein binding sites

Project description:Coordination of chromosome segregation and cytokinesis is crucial for efficient cell proliferation. In Bacillus subtilis the nucleoid occlusion protein Noc protects chromosomes by associating with the chromosome and preventing cell division in its vicinity. Using protein localization, ChAP-on-Chip and bioinformatics, we have identified a consensus Noc-binding DNA sequence (NBS), and show that Noc is targeted to about 70 discrete regions scattered around the chromosome, though absent from a large region around the replication terminus. Purified Noc bound specifically to an NBS in vitro. NBSs inserted near the replication terminus bound Noc-YFP and caused a delay in cell division. An autonomous plasmid carrying an NBS recruited Noc-YFP and conferred a severe Noc-dependent inhibition of cell division. This shows that Noc is a potent inhibitor of division but that its activity is strictly localized by interaction with NBS sites in vivo. We propose that Noc not only serves as a spatial regulator of cell division to protect the nucleoid, but also a timing device with an important role in the co-ordination of chromosome segregation and cell division.

2009-07-01 | E-MEXP-2133 | biostudies-arrayexpress

ChIP-seq analysis of Foxa2 binding sites in midbrain dopaminergic progenitors

Project description:ChIP-seq analysis of Foxa2 binding sites in midbrain dopaminergic progenitors

| PRJEB3033 | ENA