Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Metagenome-assembled genomes for new prokaryotic species from Korean gut metagenomes.

PROVIDER: PRJNA678426 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other
	SRR13061000_1.fastq.gz	Fastqsanger.gz
	SRR13061000_2.fastq.gz	Fastqsanger.gz
	SRR13061001_1.fastq.gz	Fastqsanger.gz
	SRR13061001_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 213

Similar Datasets

Human Feces

Project description:Metagenome-assembled genomes for new prokaryotic species from Indian and Japanese gut metagenomes.

| PRJNA730993 | ENA

human gut metagenome

Project description:Metagenome-assembled genomes for new prokaryotic species

| PRJNA1196170 | ENA

Global Human Gut MAG (HGM) Dataset

Project description:Prokaryotic genomes for 2058 new species assembled from globally distributed human gut metagenomes

| PRJEB31003 | ENA

Engineered fibre enables targeted activation of butyrate-producing microbiota in the distal gut

Project description:Beneficial modulation of the gut microbiome has high-impact implications not only in humans, but also in livestock that sustain our current societal needs. In this context, we have engineered an acetylated galactoglucomannan (AcGGM) fibre from spruce trees to match unique enzymatic capabilities of Roseburia and Faecalibacterium species, both renowned butyrate-producing gut commensals. The accuracy of AcGGM was tested in an applied pig feeding trial, which resolved 355 metagenome-assembled genomes together with quantitative metaproteomes. In AcGGM-fed pigs, both target populations differentially expressed AcGGM-specific polysaccharide utilization loci, including novel, mannan-specific esterases that are critical to its deconstruction. We additionally observed a “butterfly effect”, whereby numerous metabolic changes and interdependent cross-feeding pathways were detected in neighboring non-mannolytic populations that produce short-chain fatty acids. Our findings show that intricate structural features and acetylation patterns of dietary fibre can be customized to specific bacterial populations, with the possibility to create greater modulatory effects at large.

2020-09-28 | PXD015757 | Pride

Complete metabolic reconstruction of the microbiome of the model sponge Ianthella basta

Project description:Marine sponges are essential for coral reefs to thrive and harbour a diverse microbiome that is thought to contribute to host health. Although the overall function of sponge symbionts has been increasingly described, in-depth characterisation of each taxa remains challenging, with many sponge species hosting up to 3,000 distinct microbial species. Recently, the sponge Ianthella basta has emerged as a model organism for symbiosis research, hosting only three dominant symbionts: a Thaumarchaeotum, a Gammaproteobacterium, and an Alphaproteobacterium and a range of other minor taxa. Here, we retrieved metagenome assembled genomes (MAGs) for >90% of I. basta’s microbial community which allowed us to make a complete metabolic reconstruction of the sponge’s microbiome, identifying metabolic complementarity between microbes, as well as the importance of symbionts present in low abundance. We also mined the metagenomes for putative viral sequences, highlighting the contribution of viruses to the overall metabolism of the sponge, and complement this data with metaproteomic sequencing to identify active metabolic pathways in both prokaryotes and viruses. This data now allows us to use I. basta as a model organism for studying host-microbe interactions and provides a basis for future (genomic) manipulative experiments.

2023-02-24 | PXD032278 | Pride

Metagenome-Assembled Genomes from Amazon river basin

Project description:Prokaryotic metagenome-assembled genomes retrieved from Amazon river basin water samples metagenomes sequenced in Illumina platform

| PRJEB25176 | ENA

soil/sediment metagenome

Project description:Amazonian soil and sediment metagenomes and metagenome-assembled genomes

| PRJNA782633 | ENA

gut metagenome

Project description:Metagenome-assembled genomes from the chicken gut

| PRJNA792475 | ENA

cold seep sediments

Project description:3,164 metagenome-assembled genomes recovered from global cold seep metagenomes

| PRJNA950938 | ENA

bacterium

Project description:Metagenome-assembled genomes