Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Epibiotic and internal microbial communities of the hydrothermal Scaly-foot Snails from Kairei and Longqi vent fields

PROVIDER: PRJNA679429 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR13120400_1.fastq.gz	Fastqsanger.gz
	SRR13120400_2.fastq.gz	Fastqsanger.gz
	SRR13120401_1.fastq.gz	Fastqsanger.gz
	SRR13120401_2.fastq.gz	Fastqsanger.gz
	SRR13120402_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 36

Similar Datasets

Metaproteome analysis of hydrothermal vent chimney biofilms

Project description:At hydrothermal vent sites, chimneys consisting of sulfides, sulfates, and oxides are formed upon contact of reduced hydrothermal fluids with oxygenated seawater. The walls and surfaces of these chimneys are an important habitat for vent-associated microorganisms. We used community proteogenomics to investigate and compare the composition and in situ protein expression of microbial communities colonizing two actively venting hydrothermal chimneys from the Manus Basin back-arc spreading center (Papua New Guinea).

2018-04-27 | PXD009105 | Pride

mollusc metagenome

Project description:Symbiont population genomics of Scaly-foot Snails in the hydrothermal vents of Indian Ocean

| PRJNA764822 | ENA

Proteogenomic characterization of microbial communities fueled by metal-sulfide oxidation of inactive hydrothermal chimneys

Project description:Iron-sulfur minerals such as pyrite are found in many marine benthic habitats. At deep-sea hydrothermal vent sites they occur as massive sulfide chimneys. Hydrothermal chimneys formed by mineral precipitation from reduced vent fluids upon mixing with cold oxygenated sea water. While microorganisms inhabiting actively venting chimneys and utilizing reduced compounds dissolved in the fluids for energy generation are well studied, only little is known about the microorganisms inhabiting inactive sulfide chimneys. We performed a comprehensive meta-proteogenomic analysis combined with radiometric dating to investigate the diversity and function of microbial communities found on inactive sulfide chimneys of different ages from the Manus Basin (SW Pacific). Our study sheds light on potential lifestyles and ecological niches of yet poorly described bacterial clades dominating inactive chimney communities.

2019-01-02 | PXD010074 | Pride

invertebrate gut metagenome

Project description:Gut microbiota of hydrothermal vent Rimicaris Kairei in Central Indian Ridge hydrothermal vent

| PRJNA769821 | ENA

Temporal gill transcriptome of the deep-sea mussel Bathymodiolus azoricus in situ and in the laboratory

Project description:The project was designed to explore biological rhythms in the hydrothermal vent mussel Bathymodiolus azoricus. The experiment provides the first high-resolution temporal transcriptomes of an hydrothermal species, both in situ and in the laboratory. For each condition, 5 mussels were sampled every 2h 4min for 24h 48min.

2020-06-12 | E-MTAB-8451 | biostudies-arrayexpress

Bathymodiolus azoricus host-symbiont proteomics

Project description:Bathymodiolus azoricus is a deep-sea mussel found in the hydrothermal vent fields of the Mid-Atlantic Ridge. It lives in symbiosis with sulfur- and methane-oxidizing γ-proteobacteria within its gills. In our study, we aimed to understand the metabolic and physiological interconnections between the symbiotic partners. For this purpose, symbionts and host were physically separated using density gradient centrifugation. This procedure yielded a symbiont-enriched gradient pellet fraction and a supernatant fraction enriched in host components. The cytosolic and membrane-associated proteome of both these fractions along with whole gill and foot tissue of the mussel were then investigated through 1D-PAGE LC-MS/MS. Proteins were quantified based on their spectral counts using the NSAF method. For efficient identification, sequences from evolutionarily related endosymbiotic and free-living bacteria and from bivalve host relatives were compiled into a comprehensive protein database. A total of 3178 host and symbiont proteins were identified from all samples.

2016-10-06 | PXD004061 | Pride

Genomics insights into high pressure adaptation in a Thermococcus sp. from the world’s deepest hydrothermal vents

Project description:The present study describes the isolation of a Thermococcus sp. strain 175 from the world‘s deepest hydrothermal vent sites known thus far – The Mid-Cayman Rise.consisting of two hydrothermal venting systems Bee Bee (or Piccard), at 4950m depth and Von Damm (or Walsh) at 2300m The strain is capable of growth over 0.1MPa (atm. Pressure) to 120MPa, the widest known range of pressure dependent growth. The study further explores piezophilic adaptation using comparative genomic tools. Insights into the transcriptome of this strain providers the first look into the transcriptional machinery of peizophilic Thermococci.

2017-08-22 | GSE70228 | GEO

Project description:16S rRNA amplicon sequencing in Alviniconcha hydrothermal vent snails

| PRJNA763784 | ENA

hydrothermal vent metagenome

Project description:Hydrothermal vent fields at East Scotia Ridge, Antarctica

| PRJNA237774 | ENA

Project description:metagenome of hydrothermal vent fields in Indian ocean

| PRJNA751690 | ENA