Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

RNAseq and ATACseq Analysis CD4+ T cells response to isoalloLCA treatment in vitro

ABSTRACT: RNAseq and ATACseq Analysis CD4+ T cells response to isoalloLCA treatment in vitro

PROVIDER: PRJNA685789 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR13260227.fastq.gz	Fastqsanger.gz
	SRR13260228.fastq.gz	Fastqsanger.gz
	SRR13260229.fastq.gz	Fastqsanger.gz
	SRR13260230.fastq.gz	Fastqsanger.gz
	SRR13260231.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 30

Similar Datasets

ATACseq Analysis CD4+ T cells response to isoalloLCA treatment in vitro

Project description:ATACseq Analysis CD4+ T cells response to isoalloLCA treatment in vitro

| PRJNA685793 | ENA

ATACseq and RNAseq of mouse CD4 T cells

Project description:ATACseq and RNAseq of mouse CD4 T cells

| PRJNA766046 | ENA

RNAseq Analysis CD4+ T cells response to isoalloLCA treatment in vitro

Project description:RNAseq Analysis CD4+ T cells response to isoalloLCA treatment in vitro

| PRJNA685792 | ENA

ATACseq Analysis CD4+ T cells response to isoalloLCA treatment in vitro

Project description:We examine the chromatin landscape of murine CD4+ T cell cultured under Th0 condition (anti-CD3; anti-CD28; IL-2), treated with DMSO, isoalloLCA (20 uM) for 48 hrs, We compare cells from wild-type control mice and Nr4a1-deficient mice

2021-01-06 | GSE163350 | GEO

RNAseq and ATACseq Analysis CD4+ T cells response to isoalloLCA treatment in vitro

Project description:This SuperSeries is composed of the SubSeries listed below.

2021-01-06 | GSE163351 | GEO

Single nucleus multiome (RNAseq and ATACseq) of female mouse pituitary

Project description:We report the single nucleus multiome (RNAseq+ATACseq) of a female mouse pituitary sample. This dataset was generated for supporting the development of a data-driven batch inference method and transforms often heterogeneous data matrices obtained from different samples into a uniformly cell-type annotated and integrated dataset.

2024-10-01 | GSE244132 | GEO

RNAseq Analysis CD4+ T cells response to isoalloLCA treatment in vitro

Project description:We examine the transcription response of murine CD4+ T cell cultured under Th0 condition (anti-CD3; anti-CD28; IL-2), treated with DMSO, isoalloLCA (20 uM) for 48 hrs, or in the presence of TGFbeta (0.25 ng/mL). We compare the differential genes regulated by isoalloLCA and TGFbeta.

2021-01-06 | GSE163349 | GEO

CD4+ T cell response to IL12 in vitro

Project description:Here we analyzed the transcriptional response to IL12 in activated CD4+ T cells in vitro. Splenic CD4+ T cells were isolated by negative selection from 6wk old male C57BL/6 mice. These were activated with CD3/28 beads for 48hrs and thereafter cultured with IL12 (100U/ml) for 2hrs or 8hrs in vitro. Cells were then transferred directly into TriZol. RNA was prepared in Trizol for gene expression profiling by Affymetrix Mouse Gene 1.0 ST Arrays.

2016-07-20 | E-GEOD-84567 | biostudies-arrayexpress

RNAseq of naive CD4 T cells deficient for Elp3 activated for 18h against WT control

Project description:CD4 T cell deficient for the Elp3 gene have a delayed cell cycle entry. We explored by RNAseq by which molecular pathway the absence of Elp3 delayed the cell cycle entry. Naive T cell from CD4-cre Elp3 fl/fl mice and WT littermate were purified and activated in vitro with CD3 and CD28 antibodies for 18h.

2020-07-31 | E-MTAB-9057 | biostudies-arrayexpress

CD4+ T cell response to IFNa in vitro

Project description:Here we analyzed the transcriptional response to IFNa in activated CD4+ T cells in vitro. We found robust induction of ISGs as early as 2hrs. Splenic CD4+ T cells were isolated by negative selection from 6wk old male C57BL/6 mice. These were activated with CD3/28 beads for 48hrs and thereafter cultured with IFNa (100U/ml) for 2hrs or 8hrs in vitro. Cells were then transferred directly into TriZol. RNA was prepared in Trizol for gene expression profiling by Affymetrix Mouse Gene 1.0 ST Arrays.

2016-07-20 | E-GEOD-84566 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data