Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Agnostic Sequencing of Human Astrovirus Positive samples in Kilifi, Kenya

PROVIDER: PRJNA692787 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR13452024_1.fastq.gz	Fastqsanger.gz
	SRR13452024_2.fastq.gz	Fastqsanger.gz
	SRR13452025_1.fastq.gz	Fastqsanger.gz
	SRR13452025_2.fastq.gz	Fastqsanger.gz
	SRR13452026_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 16

Similar Datasets

Project description:Human Norovirus GII whole genome sequencing, Kilifi, Kenya

| PRJNA699430 | ENA

Project description:HCoV WGS Kilifi, Kenya

| PRJNA547576 | ENA

Transcription profiling of human childrens host response to malaria

Project description:Subjects are children from Kilifi District Hospital, Kenya, recruited in 2001 malaria season. total RNA extracted from PaxGene tubes, total RNA and Stratagene Universal reference RNA underwent linear amplification (Message Amp, Ambion). Amplified RNA directly labelled Cy5 and Cy3 and hybridised to 'lymphochip' arrays (print run - lc36n). Scanned on Axon 4000B scanner using GenePix 4.0 software. Clinical sample ID provided in 'Disease State Description' corresponds with Sample ID in Table 1 "Clinical Information for the micro-array samples" in the associated publication.

2005-07-06 | E-SMDB-2669 | biostudies-arrayexpress

Project description:RSVB WGS KHDSS, Kilifi, Kenya

| PRJNA562116 | ENA

Host Response Malaria

2005-07-09 | GSE2900 | GEO

Project description:Airway metagenome of children in Kilifi, Kenya

| PRJEB28053 | ENA

Expression data from non-infected and HAstV-1 infected Caco-2 cells

Project description:Human astrovirus infection is known to disrupt intestinal barrier function by increasing barrier permeabilty. However, the exact cellular mechanism(s) involved is unknown. We used microarrays to detail the global gene expression changes occuring during astrovirus infection and identify necessary cellular pathways for astrovirus pathogenesis.

2022-04-08 | GSE166820 | GEO

Astrovirus replication is dependent on induction of double membrane vesicles through a PI3K-dependent, LC3-independent pathway

Project description:The cellular response to astrovirus infection is not well defined. We used single cell RNA sequencing (scRNA-seq) to determine cellular response to astrovirus early or late in infection.

2023-08-20 | GSE240869 | GEO

Ribosome profiling of astrovirus-infected cells

Project description:Ribosome profiling (RiboSeq) is a high-throughput sequencing technique for globally mapping the positions of translating ribosomes on the transcriptome. We infected Caco2 cells with human astrovirus 1 (HAstV1). Cells were harvested at 12 hpi and either flash frozen with no pre-treatment (NT), or pre-treated with lactimidomycin for 30 minutes followed by flash freezing (LTM). These samples where then used for ribosome profiling.

2020-07-04 | E-MTAB-8045 | biostudies-arrayexpress

Human astrovirus

Project description:Human astrovirus Genome sequencing

| PRJNA817257 | ENA