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Human branching cholangiocyte organoids recapitulate embryogenic bile duct development and provide an unique model to study biliary diseases.

ABSTRACT: Human branching cholangiocyte organoids recapitulate embryogenic bile duct development and provide an unique model to study biliary diseases.

PROVIDER: PRJNA744244 | ENA |

REPOSITORIES: ENA

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			Action	DRS
	SRR15054446_1.fastq.gz	Fastqsanger.gz
	SRR15054446_2.fastq.gz	Fastqsanger.gz
	SRR15054447_1.fastq.gz	Fastqsanger.gz
	SRR15054447_2.fastq.gz	Fastqsanger.gz
	SRR15054448_1.fastq.gz	Fastqsanger.gz

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Human branching cholangiocyte organoids recapitulate embryogenic bile duct development and provide an unique model to study biliary diseases. RNA-Seq

Project description:Although providing promising and unique tools for studying cholangiocytes, current tissue-derived cholangiocyte-organoid systems do not recapitulate the complex architecture of the intrahepatic bile ducts in vitro. Here, we report a new method for creating branching cholangiocyte organoids (BRCO) from human adult tissue to study the intrahepatic biliary tree and diseases. BRCOs self-organize into large complex tubular structures, while closely resembling primary cholangiocytes on a transcriptomic and functional level. They are capable of mimicking branching bile duct development as well as being used for studying diseases in which the biliary tree does not develop properly (Alagille Syndrome). Furthermore, we deliver evidence that our culture method allows for formation of complex cholangiocyte cancer (cholangiocarcinoma, CCA) organoids. These branching CCA organoids resemble the primary tumor more closely compared to previously published protocols as well as showing unique tumor-specific drug responses. In conclusion, our culture method allows for creation of novel (malignant) cholangiocyte-organoids to study the intrahepatic bile ducts.

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Human branching cholangiocyte organoids recapitulate embryogenic bile duct development and provide an unique model to study biliary diseases. scRNA-Seq

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Human branching cholangiocyte organoids recapitulate embryogenic bile duct development and provide an unique model to study biliary diseases. RNA-Seq

Project description:Human branching cholangiocyte organoids recapitulate embryogenic bile duct development and provide an unique model to study biliary diseases. RNA-Seq

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Human branching cholangiocyte organoids recapitulate embryogenic bile duct development and provide an unique model to study biliary diseases. scRNA-Seq

Project description:Human branching cholangiocyte organoids recapitulate embryogenic bile duct development and provide an unique model to study biliary diseases. scRNA-Seq

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Human branching cholangiocyte organoids recapitulate embryogenic bile duct development and provide an unique model to study biliary diseases.

Project description:This SuperSeries is composed of the SubSeries listed below.

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Proteome of human branching and non-branching cholangiocyte organoids

Project description:Current model systems for studying intrahepatic biliary disease fail to recapitulate the architecture of intrahepatic bile ducts. Organoids from intrahepatic cholangiocytes can with a new culture method grow with a branching pattern resembling the structure of intrahepatic bile ducts. This dataset contains data from samples of these organoids and from control organoids cultured without this technique. Culture have been performed using isotope labeled amino acids to help distinguish cell derived proteins from the basement membrane extract used as a culture substrate for the organoids.

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