Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Exploration of microbial communities in the guts and the casts of Eudrilus eugeniae, Perionyx excavates and Eisenia fetida

PROVIDER: PRJNA748868 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR15237046_1.fastq.gz	Fastqsanger.gz
	SRR15237046_2.fastq.gz	Fastqsanger.gz
	SRR15237047_1.fastq.gz	Fastqsanger.gz
	SRR15237047_2.fastq.gz	Fastqsanger.gz
	SRR15237048_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 20

Similar Datasets

Project description:MICROBIAL BIODIVERSITY IN THE CAST AND GUT OF THE EARTHWORM Eisenia fetida and Eudrilus eugeniae

| PRJNA1105549 | ENA

Profiling differentially expressed earthworm genes in response to TNT, RDX, or TNT+RDX exposure.

Project description:To understand molecular mechanisms of the joint effects of 2,4,6-trinitrotoluene (TNT) and hexahydro-1,3,5-trinitro-1,3,5-triazine (RDX), both widely used ordnance compounds, we constructed a microarray consisting of 4,032 cDNA isolated from the earthworm Eisenia fetida using the suppressive subtractive hybridization technique. Worms were exposed to TNT-, RDX-, or TNT+RDX-spiked soil for 28 days (TNT 50 mg/kg, RDX 30 mg/kg). Keywords: Combined toxicity of TNT and RDX to earthworm (Eisenia fetida)

2008-08-28 | GSE8909 | GEO

Profiling differentially expressed earthworm genes in response to TNT exposure.

Project description:To understand molecular mechanisms of the chronic, sublethal toxicity of 2,4,6-trinitrotoluene (TNT), a widely used ordnance compound of public concerns, we constructed a microarray consisting of 4,032 cDNA isolated from the earthworm Eisenia fetida using the suppressive subtractive hybridization technique. Worms were exposed to a gradient of TNT-spiked soil for 28 days. Based on the reproduction response to TNT, four treatments, i.e., control, 7, 35 and 139 ppm, were selected for gene expression studies. Keywords: Sublethal toxicity of TNT (dose-response) to earthworm (Eisenia fetida)

2007-10-15 | GSE7024 | GEO

Xenomicrobiota transplant experiment

Project description:Gut microbes elicit specific changes in gene expression in the colon of mice. We colonized germ-free mice with microbial communities from the guts of humans, zebrafish and termites, human skin and tongue, soil and estuarine microbial mats. We used microarrays to detail the differences in global gene expression in colon tissue that are caused by the different microbial communities 28 days after gavage into the germfree animal.

2014-10-02 | GSE57589 | GEO

Xenomicrobiota transplant experiment

2014-10-02 | E-GEOD-57589 | biostudies-arrayexpress

Profiling differentially expressed earthworm genes in response to TNT, RDX, or TNT+RDX exposure.

2008-08-28 | E-GEOD-8909 | biostudies-arrayexpress

Gene expression dynamics during regeneration of Eisenia fetida

Project description:Earthworms show a wide spectrum of regenerative potential with certain species like Eisenia fetida, a terrestrial redworm, capable of regenerating more than two-thirds of their body while other closely related species, such as Paranais litoralis seem to have lost this ability. Earthworms belong to the phylum annelida, in which the genomes of the marine oligochaete Capitella telata, and the freshwater leech Helobdella robusta have been sequenced and studied. Herein, we report the de novo assembled transcriptome of Eisenia fetida (Indian isolate), along with an analysis of the transcriptomic changes during regeneration. We also used de novo assembled RNAseq data to identify genes that are differentially expressed during regeneration, both in the newly regenerating cells and in the adjacent tissue.

2018-07-03 | GSE101310 | GEO

gut metagenome

Project description:Eisenia fetida Metagenome

| PRJNA255175 | ENA

Eisenia fetida

Project description:Eisenia fetida overview

| PRJNA83935 | ENA

Project description:microbial of Eisenia fetida and soil

| PRJNA714156 | ENA