Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Metopolophium dirhodum

ABSTRACT: Metopolophium dirhodum overview

PROVIDER: PRJNA761480 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other
	JAIOUA01.dat.gz	Other
	JAIOUA01.fasta.gz	Fasta.gz
	JAIOUA01.master.dat	Other
	SRR15711100_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 40

Similar Datasets

Metopolophium dirhodum

Project description:Metopolophium dirhodum Genome sequencing and assembly

| PRJNA751719 | ENA

Metopolophium dirhodum isolate:CAU

Project description:Metopolophium dirhodum isolate:CAU Genome sequencing and assembly

| PRJNA751716 | ENA

Project description:RNA-Seq Analyses of Metopolophium dirhodum Reveal the Underlying Resistance to Insecticides

| PRJNA692554 | ENA

RNA-Seq Analyses of Metopolophium dirhodum Reveal the Underlying Resistance to Insecticides

Project description:RNA-Seq Analyses of Metopolophium dirhodum Reveal the Underlying Resistance to Insecticides

| PRJEB42492 | ENA

GeLC-MS/MS analysis of cereal aphid saliva

Project description:Saliva was collected from c.40,000 diet reared aphids, pooled and concentrated. Samples were coming from 2 aphid species: Metopolophium dirhodum and Sitobion avenae. Proteins were fractionated using SDS PAGE and visible bands were subjected to in gel digestion. Tryptic peptides were analysised on a Thermo LTQ-FT. Protein identification from the MS/MS data was performed using the TurboSEQUEST algorithm in BioWorks v. 3.2 (Thermo Fisher Scientific) to correlate the data against ACYPIproteins v2.1, the official protein set of the pea aphid genome assembly (33291 predicted protein models; accessed November 2011) available at http://www.aphidbase.com/aphidbase/downloads. The following search parameters were used: precursor-ion mass tolerance of 1.5 Da, fragment ion tolerance of 1.0 Da with methionine oxidation and cysteine carboxyamidomethylation specified as differential modifications and a maximum of two missed cleavage sites allowed. Two filters were applied: XCorr vs. charge state (1, 2, 3 and 4 = 1.50, 2.00, 2.50 and 3.00 respectively) and peptide probability (p<0.001). Matches with multiple unique peptides and a cumulative XCorr >20 are reported. PLoS One accepted: Proteomic profiling of cereal aphid saliva reveals ubiquitous and adaptative secreted proteins. Rao S.A.K., Carolan, J.C. and Wilkinson, T.L.W.

2013-04-09 | PXD000113 | Pride

Proteomic responses of two spring wheat cultivars to combined drought and aphid Metopolophium dirhodum) infestation

Project description:In the field, plants usually have to face combined effects of abiotic and biotic stresses. In our study, two spring wheat cultivars Septima and Quintus were subjected to three water regimes (70, 50, 40 % soil water capacity SWC), aphid (Metopolophium dirhodum) infestation or the combination of both stresses, i.e., drought (50, 40% SWC) and aphids. The study has a 2x3x2 factorial design with three biological replicates. Our previous study (Saska et al. 2022) investigated plant morphophysiological characteristics and aphid life table. In the present study, the results of proteomic analysis using 2D-DIGE followed by MALDI-TOF/TOF protein identification are presented. Drought, but also aphid infestation led to alterations in 113 protein spots including proteins assigned to a variety of biological processes ranging from signalling via energy metabolism, redox regulation, stress and defense responses to secondary metabolism indicating a long-term adaptation to adverse conditions. The absence of specific proteins involved in plant response to herbivorous insects indicates a loss of resistance to aphids in modern wheat cultivars during the breeding process. Septima revealed enhanced tolerance with respect to Quintus as indicated by higher values of morphophysiological characteristics (above-ground biomass, leaf length, osmotic potential per full water saturation) and rel. abundance of proteins involved in mitochondrial respiration and ATP biosynthesis.

2022-10-25 | PXD035083 | Pride

Divergent Patterns of Endogenous Small RNA Populations From Seed and Vegetative Tissues of Glycine max

Project description:An overview of small RNAs sequences existing in seed development and contrasted with vegetative tissues of the soybean

2012-10-09 | GSE36728 | GEO

Tbx6b ChIP-chip on Ciona intestinalis embryo (early gastrula)

Project description:A genomic overview of in vivo binding of a transcription factor Tbx6b in the ascidian early gastrula embryo.

2010-03-09 | GSE17694 | GEO

SoxC ChIP-chip on Ciona intestinalis embryo (early gastrula)

Project description:A genomic overview of in vivo binding of a transcription factor SoxC in the ascidian early gastrula embryo.

2010-03-09 | GSE17692 | GEO

Snail ChIP-chip on Ciona intestinalis embryo (early gastrula)

Project description:A genomic overview of in vivo binding of a transcription factor Snail in the ascidian early gastrula embryo.