Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Zoarces viviparus

ABSTRACT: Massively parallel pyrosequencing of the Zoarces viviparus transcriptome

PROVIDER: PRJNA79403 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR013339.fastq.gz	Fastqsanger.gz
	SRR013409.fastq.gz	Fastqsanger.gz
	SRR013410.fastq.gz	Fastqsanger.gz

Items per page:

1 - 3 of 3

Similar Datasets

Zoarces viviparus

Project description:Zoarces viviparus overview

| PRJNA83925 | ENA

Zoarces viviparus

Project description:Zoarces viviparus evaluation data

| PRJNA111827 | ENA

Zoarces viviparus evaluation data

Project description:A 50-mer oligonucleotide microarray was designed for large-scale gene expression analysis in Z. viviparus. To measure the expression of the probes and the corresponding assembled transcripts, the pool of mRNA used for the sequencing was hybridized.

2009-07-24 | GSE14957 | GEO

Zoarces viviparus breed:wildtype

Project description:Genomic and transcriptomic imprints of environmental change in Zoarces viviparus through space and time

| PRJNA1068064 | ENA

Zoarces viviparus evaluation data

2010-06-24 | E-GEOD-14957 | biostudies-arrayexpress

Zoarces gillii

Project description:Zoarces gillii overview

| PRJNA931417 | ENA

Enteromius viviparus

Project description:Enteromius viviparus

| PRJNA917151 | ENA

Zoarces gillii

Project description:Zoarces gillii Genome sequencing

| PRJNA830451 | ENA

Characterization of the Zoarces viviparus liver transcriptome using massively parallel pyrosequencing.

Project description:BACKGROUND: The teleost Zoarces viviparus (eelpout) lives along the coasts of Northern Europe and has long been an established model organism for marine ecology and environmental monitoring. The scarce information about this species genome has however restrained the use of efficient molecular-level assays, such as gene expression microarrays. RESULTS: In the present study we present the first comprehensive characterization of the Zoarces viviparus liver transcriptome. From 400,000 reads generated by massively parallel pyrosequencing, more than 50,000 pieces of putative transcripts were assembled, annotated and functionally classified. The data was estimated to cover roughly 40% of the total transcriptome and homologues for about half of the genes of Gasterosteus aculeatus (stickleback) were identified. The sequence data was consequently used to design an oligonucleotide microarray for large-scale gene expression analysis. CONCLUSION: Our results show that one run using a Genome Sequencer FLX from 454 Life Science/Roche generates enough genomic information for adequate de novo assembly of a large number of genes in a higher vertebrate. The generated sequence data, including the validated microarray probes, are publicly available to promote genome-wide research in Zoarces viviparus.

| S-EPMC2725146 | biostudies-literature

Dictyocaulus viviparus

Project description:Dictyocaulus viviparus genome sequencing

| PRJEB5116 | ENA