Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Genome-wide maps of transcription in PNPO overexpression(OE) and empty vector(EV) cells in RAW264.7

ABSTRACT: Genome-wide maps of transcription in PNPO overexpression(OE) and empty vector(EV) cells in RAW264.7

PROVIDER: PRJNA798044 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR17645734_1.fastq.gz	Fastqsanger.gz
	SRR17645734_2.fastq.gz	Fastqsanger.gz
	SRR17645735_1.fastq.gz	Fastqsanger.gz
	SRR17645735_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 4 of 4

Similar Datasets

Genome-wide maps of transcription in PNPO overexpression(OE) and empty vector(EV) cells in RAW264.7

Project description:We found different genes change between EV and PNPO-OE RAW264.7 cells.

2023-06-15 | GSE193820 | GEO

High-resolution Hi-C maps in EV and ZFP661-3HA OE mESCs

Project description:In this assay, we aimed to investigate the impacts of ZFP661 on the permeability of CTCF barriers to chromatin interactions. To achieve this, we generated high-resolution Hi-C maps using empty vector (EV) control and ZFP661-3HA overexpressing (OE) mESCs. Our findings demonstrate that ZFP661 suppresses the trapping of cohesin at the CTCF barriers and modulates their permeability.

2023-05-09 | GSE231867 | GEO

Capture Hi-C in (EV and ZFP661-3HA OE) mESCs and E16.5 mouse forebrains

Project description:This assay aimed to investigate the regulatory role of ZFP661 in modulating the permeability of CTCF barriers. To achieve this, we generated Capture Hi-C maps on several regions bound by ZFP661 using E16.5 forebrains from wild-type (WT) and Zfp661 knockout (KO) mice, as well as empty vector (EV) control and ZFP661-3HA overexpressing (OE) mESCs. Our findings reveal that ZFP661 modulates the permeability of CTCF barriers, thereby balancing between the interactions that are trapped at the barriers and those passing over them.

2023-05-09 | GSE231864 | GEO

Osteopontin vs empty vector

Project description:Osteopontin tranfected vs empty vector breast cell line Keywords: parallel sample

2004-01-07 | GSE939 | GEO

Gene expression in iPrEC cell line transfected with wild-type USP2A, mutant USP2A, or empty vector.

Project description:Gene expression was measured on the Affymetrix platform in iPrEC cell line transfected with wild-type USP2A, mutant USP2A, or empty vector. Gene expression was measured in 3 distinct groups (cell transfected with wild-type USP2A, mutant USP2A, or the empty vector). For each group 5 biological replicates were obtained and gene expression was measured on the Affymetrix GeneChip Human Genome U133 Plus 2.0 Array. Differential gene expression was obtained for all the 3 possible pair-wise comparisons (WT versus MUT, WT versus EV, and MUT versus EV).

2011-12-27 | E-GEOD-17466 | biostudies-arrayexpress

HCT116 cells N-BLR shRNA vs. empty vector control

Project description:HCT116 cells transfected with lentiviral vectors expressing two different N-BLR shRNAs (clones #3-1 and #4-7) and empty vector control

2016-12-27 | GSE92915 | GEO

OSLN Reprogramming cells: empty vector vs. HIF2α over-expression

Project description:Transcriptional profiling of Oct4, Sox2, Lin28 and Nanog (OSLN) reprogramming cell of empty vector compared to HIF2α over-expression at the early stage (day 12) and the late stage(day 30) using fibroblasts MRC5 and IMR90

2014-05-01 | GSE54898 | GEO

Transcription profiling of human mammary epithelial cells transduced with either hTERT, empty LXSN vector or empty BABE vector

Project description:Analysis of gene expression in mammary epithelial cells transduced with either hTERT, empty LXSN vector or empty BABE vector.

2007-12-13 | E-GEOD-361 | biostudies-arrayexpress

Transcription profiling of human 13q14-\- cell line expressing doxycylin-inducible miR-15a/16-1 and empty vector (EV)

Project description:Reexpression of microRNAs miR-15a/16-1 in a cell line deficient for these miRs (homozygous deletion of chromosomal region 13q14) results in the downregulation of certain mRNAs. Experiment Overall Design: A doxycyclin-inducible expression vector containing miR-15a/16-1 was transfected into CLL-I83E95 cells that are deficient for those miRs. miR-expression was induced by addition of doxycyclin to the medium, and cell were harvested 48 hours later. Labeled cRNA was hybridized to microarrays and gene expression data were compared to CLL-I83U95 stably transfected with an empty vector.

2009-12-05 | E-GEOD-18866 | biostudies-arrayexpress

Expression data from human nasopharynx cell line transfected with gene or empty vector.

Project description:We used microarrays to detail the global gene expression in human nasopharynx cell line transfected with gene or empty vector.

2015-04-01 | GSE67456 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data