Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Pratylenchus coffeae

ABSTRACT: Transcriptome analysis of the lesion nematode Pratylenchus coffeae by 454 sequencing technology

PROVIDER: PRJNA79895 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR090313.fastq.gz	Fastqsanger.gz

Items per page:

1 - 1 of 1

Similar Datasets

Pratylenchus coffeae

Project description:Pratylenchus coffeae overview

| PRJNA84057 | ENA

Pratylenchus coffeae

Project description:Pratylenchus coffeae Raw sequence reads

| PRJNA276478 | ENA

Identification of early response genes to Pratylenchus coffeae in resistant ramie by digital gene expression analysis

Project description:Digital gene expression (DGE) analysis was performed to study differentially expressed genes (DEGs) between CK and P. coffeae challenged (CH) roots of ramie. A total of 10.16 and 8.07 million clean reads were detected in the CK and CH libraries, respectively. A total of 137 genes were identified as DEGs, 117 and 20 of them were up- and down- regulated respectively, in response to P. coffeae infection. Roots samples of Pratylenchus coffeae infected(E2) and un-infected (E1) ramie were RNA-Seq sequenced to compare differented expressed genes.

2015-01-20 | E-GEOD-64974 | biostudies-arrayexpress

Identification of early response genes to Pratylenchus coffeae in resistant ramie by digital gene expression analysis

2015-01-20 | GSE64974 | GEO

Pratylenchus penetrans PME - Identification and characterization of the first pectin methylesterase gene discovered in the root lesion nematode Pratylenchus penetrans

Project description:Similar to other plant-parasitic nematodes, root lesion nematodes possess an array of enzymes that are involved in degradation of the plant cell wall. Here we report the identification of a gene encoding a cell wall degrading enzyme, pectin methylesterase PME (EC 3.1.1.11), in the root lesion nematode Pratylenchus penetrans. Both genomic and coding sequences of the gene were cloned for this species, showing the presence of four introns that excluded a potential bacterial contamination. Expression of the Pp-pme gene was localized in the esophageal glands of P. penetrans as determined by in situ hybridization. Temporal expression of Pp-pme in planta was validated for early time points of infection. The possible function and activity of the gene were assessed by transient expression of Pp-pme in N. benthamiana plants via a Potato virus X-based vector. To our knowledge, this is the first report on identification and characterization of a PME gene within the phylum Nematoda.

2019-02-28 | PXD012419 | Pride

Pratylenchus penetrans

Project description:Pratylenchus penetrans transcriptome

| PRJNA304159 | ENA

Polyphagozerra coffeae

Project description:Polyphagozerra coffeae Raw sequence reads

| PRJNA972835 | ENA

Project description:Comparative genomics analysis of root-lesion nematode Pratylenchus crenatus

| PRJNA1098593 | ENA

Project description:Comparative genomics analysis of root-lesion nematode Pratylenchus penetrans

| PRJNA1098698 | ENA

Pratylenchus thornei