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Time series transcriptome of Venturia inaequalis (apple scab) infecting Malus domestica (apple)

ABSTRACT: Time series transcriptome of Venturia inaequalis (apple scab) infecting Malus domestica (apple)

PROVIDER: PRJNA814268 | ENA |

REPOSITORIES: ENA

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			Action	DRS
	SRR18280417_1.fastq.gz	Fastqsanger.gz
	SRR18280417_2.fastq.gz	Fastqsanger.gz
	SRR18280418_1.fastq.gz	Fastqsanger.gz
	SRR18280418_2.fastq.gz	Fastqsanger.gz
	SRR18280419_1.fastq.gz	Fastqsanger.gz

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Time series transcriptome of Venturia inaequalis (apple scab) infecting Malus domestica (apple)

Project description:V. inaequalis causes apple scab disease, the most economically important disease of apples. In this study, we generated a comprehensive RNA-seq transcriptome of V. inaequalis during host colonization of apple, with six in planta time points (12hpi, 24hpi, 2dpi, 3dpi, 5dpi, 7dpi) and one in culture reference (fungus grown on cellophane membranes overlaying potato dextrose agar). Analysis of this transcriptome identified five in planta gene expression clusters or waves corresponding to three specific infection stages: early, mid and mid-late infection of subcuticular biotrophic host-colonization. In our analysis we focus on general fungal nutrition (plant cell wall degrading enzymes and transporters) as well as effectors (proteinaceous effectors and secondary metabolites). Early infection was characterized by the expression of genes that encode plant cell wall-degrading enzymes (PCWDEs) and proteins associated with oxidative stress responses. Mid-late infection was characterized by genes that encode PCWDEs and effector candidates (ECs).

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Expression data for apple Rvi6 host resistance and nonhost resistance against scab

Project description:Comparative analyze at the transcriptomic level 1) of Venturia inaequalis apple host resistance via the major resistance gene Rvi6, in Rvi6 overexpressing transgenic apple versus ‘Gala’ susceptible variety; 2) of Venturia pyrina apple nonhost resistance, in ‘Gala’ variety, 24 and 72 hours post inoculation.

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Expression data for 1) pear host resistance allowed by transgenic expression of apple Rvi6 resistance gene and 2) nonhost resistance against scab

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