Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Oil samples

ABSTRACT: Indigenous Microbial Communities Modulation in Petroleum Reservoirs by Single-species Manipulation

PROVIDER: PRJNA838702 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR19239400_1.fastq.gz	Fastqsanger.gz
	SRR19239400_2.fastq.gz	Fastqsanger.gz
	SRR19239500.fastq.gz	Fastqsanger.gz
	SRR19239401_1.fastq.gz	Fastqsanger.gz
	SRR19239401_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 393

Similar Datasets

Degradation of C30 - Reduced TCA cycle rates at high hydrostatic pressure hinder hydrocarbon degradation and obligate oil degraders in natural, deep-sea microbial communities

Project description:A significant part of the heavier petroleum fraction resulting from offshore oil-spills sinks to the deep-sea. Its fate and biodegradation by microbial communities is unclear. In particular, the physiological and metabolic features of hydrostatic pressure (HP) adapted oil-degraders have been neglected. In this study, hydrocarbon-free sediment from 1km below surface water (bsl) was incubated at 0.1, 10 and 20MPa (equivalent to surface waters, 1 and 2km bsl) using triacontane (C30) as sole carbon source for a 3-month enrichment period. HP strongly impacted biodegration, as it selected for microbial communities with small cells, high O2 respiration and nutrients requirements, but low biomass and C30-degradation yields. The alkane-degrading metaproteome linked to β-oxidation was detected but its expression was reduced under HP contrary to several housekeeping genes. This was reflected in the enriched communities, as atmospheric pressure was dominated by hydrocarbonoclastic bacteria while non-specialized or previously unrecognized oil-degrading genera were enriched under HP.

2018-12-19 | PXD004328 | Pride

oil production facility metagenome

Project description:Bacterial communities in water flooding oil reservoirs of China

| PRJDB3328 | ENA

oil production facility metagenome

Project description:Archaeal communities in water flooding oil reservoirs of China

| PRJDB3381 | ENA

aquatic metagenome

Project description:Microbial community diversity in petroleum reservoirs

| PRJNA246768 | ENA

oil production facility metagenome

Project description:Enriched oil petroleum sample Metagenome

| PRJNA237336 | ENA

Endophytic and rhizophytic prokaryotic communities in S. alterniflora and petroleum degradation

Project description:The experiment was designed to test the interactions of Spartina alterniflora, its microbiome, and the interaction of the plant-microbe relationship with oil from the Deepwater Horizon oil spill (DWH). Total RNA was extracted from leaf and root microbiome of S. alterniflora in soils that were oiled in DWH oil spill with or without added oil, as well as those grown in unoiled soil with or without added oil. The work in its entirety characterizes the transport, fate and catabolic activities of bacterial communities in petroleum-polluted soils and within plant tissues.

2020-04-10 | GSE148431 | GEO

Whole transcriptome analysis of Acinetobacter calcoaceticus Aca13 induced by n-hexadecane or naphthalene

Project description:Petroleum hydrocarbons are recalcitrant contaminants, which has caused most serious environmental problems. Acinetobacter calcoaceticus Aca13 was isolated from petroleum polluted soil for petroleum biodegradation. Hexadecane and naphthalene were used to incubate with Acinetobacter calcoaceticus Aca13. After incubation, the whole transcriptome was obtained from treated groups and control groups, and then used for RNA sequence and analysis. Obtained data in this project will help us understand the biodegradation mechanism of hexadecane and naphthalene, and will be helpful for the bioremediation of petroleum hydrocarbons.

2024-06-30 | GSE235642 | GEO

Microbial communities from petroleum reservoirs with high-salinity formation water

Project description:Microbial communities from petroleum reservoirs with high-salinity formation water Raw sequence reads

| PRJNA927132 | ENA

Global analysis of the transcriptional difference between indigenous and invasive whiteflies reveals the possible mechanism of whitefly invasion

Project description:The whitefly Bemisa tabaci is a species complex of more than 31 cryptic species which include some of the most destructive invasive pests of many ornamental and glasshouse crops worldwide. Among them, Middle East-Asia Minor 1 (herein MEAM1) and Mediterranean (herein MED) have invaded many countries around the world and displaced the native whitefly species. However, the molecular differences between invasive and indigenous whiteflies remain largely unknown. The global transcriptional difference between the two invasive whitefly Bemisia tabaci species (MEAM1, MED) and one indigenous whitefly species (Asia II 3) were analyzed using the Illumina sequencing technology.

2013-11-24 | E-GEOD-41864 | biostudies-arrayexpress

aquatic metagenome

Project description:Biogeographic patterns of microbial communities in water-flooding petroleum reservoirs, China Targeted Locus (Loci)

| PRJNA271507 | ENA