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Columbia Basin potato purple top phytoplasma strain:CBPPT1

ABSTRACT: Columbia Basin potato purple top phytoplasma strain:CBPPT1 Genome sequencing and assembly

PROVIDER: PRJNA839414 | ENA |

REPOSITORIES: ENA

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			Action	DRS
		Other
	SRR20897170_1.fastq.gz	Fastqsanger.gz
	SRR20897170_2.fastq.gz	Fastqsanger.gz
	SRR20897171_1.fastq.gz	Fastqsanger.gz
	SRR20897171_2.fastq.gz	Fastqsanger.gz

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Columbia Basin potato purple top phytoplasma

Project description:Columbia Basin potato purple top phytoplasma overview

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Columbia Basin potato purple top (CBPPT) phytoplasma is a 'Candidatus Phytoplasma trifolii'-related strainThe CBPPT phytoplasma was identified from diseased brinjal plants growing in a production field located in Gorakhpur, UP, India

Project description:Columbia Basin potato purple top (CBPPT) phytoplasma is a 'Candidatus Phytoplasma trifolii'-related strainThe CBPPT phytoplasma was identified from diseased brinjal plants growing in a production field located in Gorakhpur, UP, India Metagenomic asse

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phytoplasma in plants vs. phytoplasma in insects (co-hybridizations)

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Project description:Transcriptional profiling of phytoplasma grown in plant (Chrysanthemum coronarium) and grown in insect (Macrosteles striifrons). Two-condition experiment, phytoplasma-infected plant and phytoplasma-infected insect. Biological replicates: 4 phytoplasma-infected plants and 4 phytoplasma-infected insects, independently grown and harvested. One replicate per array.

2012-01-16 | E-GEOD-29274 | biostudies-arrayexpress

phytoplasma in plants vs. phytoplasma in insects (single hyb expts)

Project description:Transcriptional profiling of phytoplasma grown in plant (Chrysanthemum coronarium) and grown in insect (Macrosteles striifrons).

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Project description:Background: Witches’ broom disease of Mexican lime (Citrus aurantifolia L.), which is caused by the phytoplasma “Candidatus Phytoplasma aurantifolia”, is a devastating disease that results in significant economic losses. Plants adapt to abiotic stresses by regulating gene expression at the transcriptional and post-transcriptional levels. MicroRNAs (miRNAs) are a recently identified family of molecules that regulate plant responses to environmental stresses through post-transcriptional gene silencing. Methods: Using a high-throughput approach to sequence small RNAs, we compared the expression profiles of miRNAs in healthy Mexican lime trees and in plants infected with “Ca. Phytoplasma aurantifolia”. Results: Our results demonstrated the involvement of different miRNAs in the response of Mexican lime trees to infection by “Ca. Phytoplasma aurantifolia”. We identified miRNA families that are expressed differentially upon infection with phytoplasmas. Most of the miRNAs had variants with small sequence variations (isomiRs), which are expressed differentially in response to pathogen infection. Conclusions: It is likely that the miRNAs that are expressed differentially in healthy and phytoplasma-infected Mexican lime trees are involved in coordinating the regulation of hormonal, nutritional, and stress signalling pathways, and the complex interactions between them. Future research to elucidate the roles of these miRNAs should improve our understanding of the level of diversity of specific plant responses to phytoplasmas.

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