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Growing substrate and surrounding soil environment

ABSTRACT: Microbial community (bacteria and fungi) in agro-based spent mushroom compost substrate and surrounding soil

PROVIDER: PRJNA901255 | ENA |

REPOSITORIES: ENA

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			Action	DRS
	SRR22571422_1.fastq.gz	Fastqsanger.gz
	SRR22571422_2.fastq.gz	Fastqsanger.gz
	SRR22571423_1.fastq.gz	Fastqsanger.gz
	SRR22571423_2.fastq.gz	Fastqsanger.gz
	SRR22571424_1.fastq.gz	Fastqsanger.gz

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The physiology of Agaricus bisporus in semi-commercial compost cultivation appears to be highly conserved among unrelated isolates

Project description:The white button mushroom Agaricus bisporus is the most widely produced edible fungus with a great economical value. Its commercial cultivation process is often performed on wheat straw and animal manure based compost that mainly contains lignocellulosic material as a source of carbon and nutrients for the mushroom production. As a large portion of compost carbohydrates are left unused in the current mushroom cultivation process, the aim of this work was to study wild-type A. bisporus strains for their potential to convert the components that are poorly utilized by the commercial strain A15. Growth profiling suggested different abilities for several A. bisporus strains to use plant biomass derived polysaccharides, as well as to transport and metabolize the corresponding monomeric sugars. Six wild-type isolates with diverse growth profiles were compared for mushroom production to A15 strain in semi-commercial cultivation conditions. Transcriptome and proteome analyses of the three most interesting wild-type strains and A15 indicated that the unrelated A. bisporus strains degrade and convert plant biomass polymers in a highly similar manner. This was also supported by the chemical content of the compost during the mushroom production process. Our study therefore reveals a highly conserved physiology for unrelated strains of this species during growth in compost.

2018-05-22 | GSE99928 | GEO

GNPS-The effect of olive mill solid waste (OMSW) on the diversity of medicinal mushrooms specialized metabolism. Positive and Negative

Project description:Two mushrooms' species, Hericium and Pleurotus were grown on a mushroom substrate mixed with different precentage of olive mill solid waste (OMSW). Mushroom fruit body (FB), spent mushroom substrate (SMS) and mushroom substrate alone without mushroom mycelium (MS) were extracted by methanol and injected to LC-MS/MS (Experimental details included in the methods and protocol's part). computational metabolomic tools have been used to study the effect of the OMSW on the diversity of the mushrooms specialized metabolism.

2022-12-08 | MSV000090870 | GNPS

Project description:Analysis of forest soil microbial community after treatment of spent mushroom substrate

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GNPS-The effect of olive mill solid waste (OMSW) on the diversity of medicinal mushrooms specialized metabolism. Negative ion mode

Project description:Two mushrooms' species, Hericium and Pleurotus were grown on a mushroom substrate mixed with different percentage of olive mill solid waste (OMSW). Mushroom fruit body (FB) spent mushroom substrate (SMS) and mushroom substrate alone without mushroom mycelium (MS) were extracted by methanol and injected to LC-MS/MS, using electro spray ionization (ESI) in a negative ion mode. (Experimental details included in the methods and protocol's part). computational metabolomic tools have been used to study the effect of the OMSW on the diversity of the mushrooms specialized metabolism.

2022-12-16 | MSV000090920 | GNPS

GNPS-The effect of olive mill solid waste (OMSW) on the diversity of medicinal mushrooms specialized metabolism. Positive ion mode

Project description:Two mushrooms' species, Hericium and Pleurotus were grown on a mushroom substrate mixed with different percentage of olive mill solid waste (OMSW). Mushroom fruit body (FB) spent mushroom substrate (SMS) and mushroom substrate alone without mushroom mycelium (MS) were extracted by methanol and injected to LC-MS/MS, using electro spray ionization (ESI) in a positive ion mode. (Experimental details included in the methods and protocol's part). computational metabolomic tools have been used to study the effect of the OMSW on the diversity of the mushrooms specialized metabolism.

2022-12-16 | MSV000090919 | GNPS

Project description:Effects of Spent Mushroom Substrate on Physicochemical Properties of Seedling Substrate and Quality of Rice Seedlings

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Project description:Co-composting of the chicken manure and spent mushroom substrate as a rice seedlings growth substrate

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Expression data from Arabidopsis grown in perlite and compost

Project description:Composts are the products obtained after the aerobic degradation of different types of organic matter wastes and can be used as substrates or substrate/soil amendments. There are a small but increasing number of reports that suggest that foliar diseases may be reduced when using compost as growing medium compared to standard substrates. The purpose of this study was to unravel the gene expression alteration produced by the compost to gain knowledge about the mechanisms involved in the compost-induced systemic resistance. A compost from olive marc and olive tree leaves was able to induce resistance against Botrytis cinerea in Arabidopsis compared to the standard substrate perlite. Microarray analyses revealed that 178 genes were differently expressed with a fold change cut off of 1 from which 155 were upregulated and 23 were down regulated in compost-grown compared to perlite-grown plants. Functional enrichment study of up regulated genes revealed that 38 Gene Ontology terms were significantly enriched. Response to stress, biotic stimulus, other organism, bacterium, fungus, chemical and abiotic stimulus, SA and ABA stimulus, oxidative stress, water, temperature and cold were significantly enriched terms as well as immune and defense responses, systemic acquired resistance, secondary metabolic process and oxireductase activity. Interestingly, PR1 expression, which was equally enhanced by growing the plants in compost and by B. cinerea inoculation, was further boosted in compost-grown pathogen-inoculated plants. Compost triggered a plant response that shares similarities with both systemic acquired resistance and ABA dependent/independent abiotic stress responses.

2012-11-09 | GSE42149 | GEO

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