Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Comprehensive Transcriptome Analysis of Different Skin Colors to Evaluate Genes Related to the Formation of Pigment in Celestial Goldfish

ABSTRACT: Comprehensive Transcriptome Analysis of Different Skin Colors to Evaluate Genes Related to the Formation of Pigment in Celestial Goldfish

PROVIDER: PRJNA909228 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR22548345_1.fastq.gz	Fastqsanger.gz
	SRR22548345_2.fastq.gz	Fastqsanger.gz
	SRR22548346_1.fastq.gz	Fastqsanger.gz
	SRR22548346_2.fastq.gz	Fastqsanger.gz
	SRR22548347_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 18

Similar Datasets

Comprehensive Transcriptome Analysis of Different Skin Colors to Evaluate Genes Related to the Formation of Pigment in Celestial Goldfish

Project description:the current study paints a thorough transcriptome profiles of different skin color groups (white, yellow and brown) in celestial goldfish, and several candidate genes were selected as important functional genes involved in the color variation

2022-12-07 | GSE220201 | GEO

Auratus goldfish genomics project - E2 effect on male goldfish hypothalamus

Project description:Adult male goldfish, exposed to estrogen (E2) implant, 1 day exposure See the following for further details; Marlatt VL, Martyniuk, CJ, Zhang, D, Xiong, H, Xia, X, Trudeau, VL, Moon, T. Tissue-specific auto-regulation of estrogen receptor subtypes and transcript profiling of estrogen-responsive genes in the neuroendocrine brain of male goldfish (Carassius auratus) exposed to 17beta-estradiol. J. Mol. Endocrinol. (accepted). Keywords: Estrogen effect on male goldfish hypothalamus, microarray

2007-05-10 | GSE7025 | GEO

Auratus goldfish genome project: Muscimol experiment (6 hour)

Project description:A goldfish brain enriched cDNA combined with a carp microarray (Gracey et al., 2004). Female goldfish were i.p. injected with 1 ug/g muscimol once and after 6 hours, telencephalon dissected and used in microarray analysis. More details on microarray hybridizations and technique used in our laboratory in Martyniuk et al. Gene expression profiling in the brain of male goldfish exposed to 17α-EE2(paper under review) Keywords: muscimol, GABA, goldfish, brain

2006-08-04 | GSE5419 | GEO

Comprehensive Transcriptome Analysis of Different Skin Colors to Evaluate Genes Related to the Production of Pigment in Celestial Goldfish.

Project description:Skin color is an important phenotypic feature of vertebrate fitness under natural conditions. Celestial goldfish, a common goldfish breed in China, mainly shows three kinds of skin colors including white, yellow and brown. However, the molecular genetic basis of this phenotype is still unclear. In this study, high-throughput sequencing was carried out on the back skin tissues of celestial goldfish with different skin colors. About 58.46 Gb of original data were generated, filtered and blasted, and 74,297 mRNAs were obtained according to the reference transcriptome. A total of 4653 differentially expressed genes were screened out among the brown, yellow and white groups, and the expression of melanogenesis related genes in brown goldfish was significantly higher than the other two groups. There are 19 common differentially expressed genes among three groups, of which eight genes are related to pigment production, including tyrp1a, slc2a11b, mlana, gch2, loc113060382, loc113079820, loc113068772 and loc113059134. RT-qPCR verified that the expression patterns of randomly selected differentially expressed transcripts were highly consistent with those obtained by RNA sequencing. GO and KEGG annotation revealed that these differentially expressed genes were mostly enriched in pathways of the production of pigment, including melanogenesis, tyrosine metabolism, Wnt signaling pathway, MAPK signaling pathway etc. These results indicated that the external characteristics of goldfish are consistent with the analysis results at transcriptome level. The results of this study will lay a foundation for further study on the expression characteristics and gene network analysis of pigment related genes.

| S-EPMC9854719 | biostudies-literature

Goldfish Genome Research

Project description:Goldfish Genome Research

| PRJEB23594 | ENA

Auratus goldfish genome project: Gene expression profiling in the brain of male goldfish exposed to 17α-EE2

Project description:A goldfish brain enriched cDNA combined with a carp microarray (Gracey et al., 2004). Experiment exposed adult male goldfish to 17-alpha ethinylestradiol for two weeks (two doses - 30 ng/L and 300 ng/L) Keywords: estrogenic exposure, dose response,

2006-05-31 | GSE4868 | GEO

Auratus goldfish genome project: Muscimol experiment (6 hour)

Project description:A goldfish brain enriched cDNA combined with a carp microarray (Gracey et al., 2004). Female goldfish were i.p. injected with 1 ug/g muscimol once and after 6 hours, telencephalon dissected and used in microarray analysis. More details on microarray hybridizations and technique used in our laboratory in Martyniuk et al. Gene expression profiling in the brain of male goldfish exposed to 17Î±-EE2(paper under review) Keywords: muscimol, GABA, goldfish, brain 4 arrays using a common control pool and 3 treatment samples. Slides 16, 22, 33, and 50 Slides 22 and 33 are dye swap.

2010-07-01 | E-GEOD-5419 | biostudies-arrayexpress

Auratus goldfish genome project: effects of fluoxetine on female goldfish

Project description:A goldfish brain enriched cDNA combined with a carp microarray (Gracey et al., 2004). Female adult goldish were treated twice a week for 17 days, for a total of five injections. Each of the injections consisted of 5 μg fluoxetine/g of body weight with an injection volume of 1μl/g. The telencephalon was tissue used. Keywords: i.p.injection of muscimol, 6 hours, pharmacological

2006-08-04 | GSE5420 | GEO

Transcriptome data for comparing gene expressions of goldfish with normal and celestial-eye

Project description:The goldfish strains with celestial-eye (CE) are popular among ornamental fish customers. The CE phenotype consists of enlarged and protuberant eyes, and the eye balls were turned upward during the development, which were suitable for top viewing in pots. Genome and transcriptome data were obtained to comparative analysis for indentifying the causal mutations of CE in goldfish.

2024-09-20 | GSE277233 | GEO

AURATUS goldfish environmental genomics projects: fadrozole in the telencephalon

Project description:Sexually mature female goldfish were exposed (waterborne) to 50 ug/L fadrozole or untreated water (control) to examine the global gene expression of fadrozole on the telencephalon.

2009-07-01 | GSE14558 | GEO