Unknown,Transcriptomics,Genomics,Proteomics

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Differentiating 3T3-L1 adipocytes, introduced with siRNA against phf21a gene


ABSTRACT: Adipogenic differentiation and metabolic adaptation are initiated through transcriptional and epigenetic reprogramming. In particular, dynamic changes in histone modifications may play central roles in the rearrangement of gene expression patterns. BHC80 protein, encoded by phf21a gene, is a part of LSD1 histone demethylase complex and is essential for the demethylation activity. To address the importance of histone demethylation in adipogenic differentiation and function, we performed cDNA microarray in BHC80-deficient 3T3-L1 cells 3T3-L1 preadipocytes were transfected with either BHC80-specific siRNA or control siRNA (siGL3). 24 hours later, cells were subjected to adipogenic induction. 24 hours later, cells were harvested for total RNA extraction.

ORGANISM(S): Mus musculus

SUBMITTER: Mitsuyoshi Nakao 

PROVIDER: E-GEOD-18599 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

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Publications

FAD-dependent lysine-specific demethylase-1 regulates cellular energy expenditure.

Hino Shinjiro S   Sakamoto Akihisa A   Nagaoka Katsuya K   Anan Kotaro K   Wang Yuqing Y   Mimasu Shinya S   Umehara Takashi T   Yokoyama Shigeyuki S   Kosai Ken-Ichiro K   Nakao Mitsuyoshi M  

Nature communications 20120327


Environmental factors such as nutritional state may act on the epigenome that consequently contributes to the metabolic adaptation of cells and the organisms. The lysine-specific demethylase-1 (LSD1) is a unique nuclear protein that utilizes flavin adenosine dinucleotide (FAD) as a cofactor. Here we show that LSD1 epigenetically regulates energy-expenditure genes in adipocytes depending on the cellular FAD availability. We find that the loss of LSD1 function, either by short interfering RNA or b  ...[more]

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