Unknown,Transcriptomics,Genomics,Proteomics

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An overlapping protein-coding region in Influenza A Virus Segment 3 modulates the host response


ABSTRACT: Segment 3 of influenza A virus contains a second open reading frame accessed via robosomal frameshifting. The frameshift product, PA-Z, comprises the endonuclease domain of viral PA protein with C-terminal demain encoded by the X-ORF and functions to repress cellular gene expression. PA-X also modulates IAV virulence in a mouse infection model. The effect of PA-X deltions were examined using 2 separate mutant influenza viruses (1918-FS/1918-PCT1) and the results compared to wild-type 1918 influenza virus. Balb/c mice were infected and samples harvested at days 3, 5 and 8 days. Four animals/condition were used. Gene expression levels from infected animals were compared to mock animals.

ORGANISM(S): Mus musculus

SUBMITTER: kathie walters 

PROVIDER: E-GEOD-38112 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

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An overlapping protein-coding region in influenza A virus segment 3 modulates the host response.

Jagger B W BW   Wise H M HM   Kash J C JC   Walters K-A KA   Wills N M NM   Xiao Y-L YL   Dunfee R L RL   Schwartzman L M LM   Ozinsky A A   Bell G L GL   Dalton R M RM   Lo A A   Efstathiou S S   Atkins J F JF   Firth A E AE   Taubenberger J K JK   Digard P P  

Science (New York, N.Y.) 20120628 6091


Influenza A virus (IAV) infection leads to variable and imperfectly understood pathogenicity. We report that segment 3 of the virus contains a second open reading frame ("X-ORF"), accessed via ribosomal frameshifting. The frameshift product, termed PA-X, comprises the endonuclease domain of the viral PA protein with a C-terminal domain encoded by the X-ORF and functions to repress cellular gene expression. PA-X also modulates IAV virulence in a mouse infection model, acting to decrease pathogeni  ...[more]

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