Unknown,Transcriptomics,Genomics,Proteomics

Dataset Information

0

Transcription profiling of E. coli K-12 wild type with R1drd19 biofilm vs wild type without R1drd19 biofilm

ABSTRACT: E. coli K-12 wild type strains gene expression in biofilm cells with R1drd19 relative to that in biofilm cells of E. coli K-12 wild type strains without R1drd19. All the samples were cultured in LB or M9C glu on glass wool at different time. Experiment Overall Design: Strains: E. coli K-12 strains with and without R1drd19 respectively; Experiment Overall Design: Medium: LB was used for BW25113 strains, and M9C glu was used for MG1655 strains; Experiment Overall Design: Biofilm grown on glass wool; Experiment Overall Design: Time: 7h, 15h, 24h respectively; Experiment Overall Design: Cell type: biofilm.

ORGANISM(S): Escherichia coli

SUBMITTER: Xiaole Yang 

PROVIDER: E-GEOD-6923 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

Json Xml
altmetric image

Publications

The R1 conjugative plasmid increases Escherichia coli biofilm formation through an envelope stress response.

Yang Xiaole X   Ma Qun Q   Wood Thomas K TK  

Applied and environmental microbiology 20080314 9

Differential gene expression in biofilm cells suggests that adding the derepressed conjugative plasmid R1drd19 increases biofilm formation by affecting genes related to envelope stress (rseA and cpxAR), biofilm formation (bssR and cstA), energy production (glpDFK), acid resistance (gadABCEX and hdeABD), and cell motility (csgBEFG, yehCD, yadC, and yfcV); genes encoding outer membrane proteins (ompACF), phage shock proteins (pspABCDE), and cold shock proteins (cspACDEG); and phage-related genes.  ...[more]

Similar Datasets

Transcriptomics Transcription profiling of E. coli K-12 mutant ycfR biofilm vs wild type 15 hr LB glu biofilm cells
2008-06-14 | E-GEOD-5904 | biostudies-arrayexpress
Transcriptomics E. coli K-12 wild type with R1drd19 biofilm vs wild type without R1drd19 biofilm
2008-03-19 | GSE6923 | GEO
Transcriptomics Transcription profiling of E. coli K-12 mutants yceP, trpE, and tnaA biofilm cell 24 hr
2008-06-13 | E-GEOD-4562 | biostudies-arrayexpress
Transcriptomics E. coli K-12 mutant ycfR biofilm vs wild type 15 hr LB glu biofilm cells
2006-09-26 | GSE5904 | GEO
Transcriptomics Transcription profiling of E. coli K-12 yliH and yceP biofilm expression relative to wild type
2008-06-12 | E-GEOD-3937 | biostudies-arrayexpress
Transcriptomics Transcription profiling of E. coli O157:H7 w/t LB-Glu 7 hr biofilm cells with various chemicals
2008-06-13 | E-GEOD-5552 | biostudies-arrayexpress
Transcriptomics Transcription profiling of Pseudomonas aeruginosa PAO1 wildtype and PA2663 biofilm cells
2008-06-19 | E-GEOD-7968 | biostudies-arrayexpress
Transcriptomics Transcription profiling of E.coli BW25113 ymgB and W/T strains LBglu 24h biofilm cells
2008-06-15 | E-GEOD-6925 | biostudies-arrayexpress
Transcriptomics Transcription profiling of E. coli K-12 biofilm, treated with 10 uM 5-fluorouracil vs. E. coli K-12 DMF treated biofilm
2009-01-09 | E-GEOD-12750 | biostudies-arrayexpress
Transcriptomics Transcription profiling of E. coli K-12 MG1655 and E. coli K-12 LVM100 delta 5 TA mutant effect on biofilm cell development
2009-02-09 | E-GEOD-11932 | biostudies-arrayexpress