Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

E. coli K-12 wild type with R1drd19 biofilm vs wild type without R1drd19 biofilm

ABSTRACT: E. coli K-12 wild type strains gene expression in biofilm cells with R1drd19 relative to that in biofilm cells of E. coli K-12 wild type strains without R1drd19. All the samples were cultured in LB or M9C glu on glass wool at different time. Keywords: biofilm

ORGANISM(S): Escherichia coli Escherichia coli K-12

PROVIDER: GSE6923 | GEO | 2008/03/19

SECONDARY ACCESSION(S): PRJNA98143

REPOSITORIES: GEO

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other

Items per page:

1 - 1 of 1

Similar Datasets

Transcription profiling of E. coli K-12 wild type with R1drd19 biofilm vs wild type without R1drd19 biofilm

Project description:E. coli K-12 wild type strains gene expression in biofilm cells with R1drd19 relative to that in biofilm cells of E. coli K-12 wild type strains without R1drd19. All the samples were cultured in LB or M9C glu on glass wool at different time. Experiment Overall Design: Strains: E. coli K-12 strains with and without R1drd19 respectively; Experiment Overall Design: Medium: LB was used for BW25113 strains, and M9C glu was used for MG1655 strains; Experiment Overall Design: Biofilm grown on glass wool; Experiment Overall Design: Time: 7h, 15h, 24h respectively; Experiment Overall Design: Cell type: biofilm.

2008-04-05 | E-GEOD-6923 | biostudies-arrayexpress

E. coli K-12 mutant ycfR biofilm vs wild type 15 hr LB glu biofilm cells

2006-09-26 | GSE5904 | GEO

Transcription profiling of E. coli K-12 mutant ycfR biofilm vs wild type 15 hr LB glu biofilm cells

Project description:E. coli K-12 BW25113 mutant strain ycfR expression in biofilm cells relative to E. coli wild-type strain expression in biofilm cells. All samples cultured in LB glu with glass wool Experiment Overall Design: Strains: E. coli K-12 BW25113 wild type and mutant ycfR Experiment Overall Design: Medium: LB glu Experiment Overall Design: Biofilm grown on glass wool Experiment Overall Design: Time: 15 hr Experiment Overall Design: Cell type: biofilm

2008-06-14 | E-GEOD-5904 | biostudies-arrayexpress

Transcription profiling of E. coli K-12 yliH and yceP biofilm expression relative to wild type

Project description:Expression in biofilm cells of mutants yceP and yliH relative to biofilm cells of E. coli K-12 wild type strain Experiment Overall Design: All strain cultured in LB glu, biofilm isolated from glass wool after culturing for 24 hrs.

2008-06-12 | E-GEOD-3937 | biostudies-arrayexpress

E. coli K-12 mutant yjgI biofilm vs. wild type biofilm

Project description:The gene expression of glasswool biofilm cells in E. coli yjgI mutant vs. E. coli wild type strain in LB. Strains: E. coli K12 BW25113 wild type, yjgI mutant Medium: LB Biofilm grown on glass wool Time: 15 h Cell type: biofilm

2011-05-29 | E-GEOD-22057 | biostudies-arrayexpress

Transcription profiling of E. coli K-12 mutants yceP, trpE, and tnaA biofilm cell 24 hr

Project description:Gene expression of (i) K-12 yceP biofilms upon addition of 600 ÂµM indole in LB glu medium, (ii) K-12 biofilms due to the trpE mutation in LB glu medium, and (iii) K-12 biofilms due to the tnaA mutation in LB medium. Experiment Overall Design: Strains:E. coli K12 BW25113 delta yceP, trpE, tnaA and wild type Experiment Overall Design: Medium:LB glu or LB Experiment Overall Design: Biofilm cells grown on glass wool Experiment Overall Design: Harvest time:24hr

2008-06-13 | E-GEOD-4562 | biostudies-arrayexpress

P. aeruginosa PA14 mutant PA4496 biofilm vs wild-type biofilm

Project description:P. aeruginosa PA14 mutant strain PA4496 expression in biofilm cells relative to PA14 wild-type strain expression in biofilm cells. All samples cultured in LB with glass wool

2018-02-14 | GSE24638 | GEO

BW25113 ymgB and W/T in LBglu 24h biofilm cells

Project description:For the microarray experiments, 10 g glass wool (Corning Glass Works, Corning, N.Y.) were used to form biofilms (30) in 250 mL in 1 L Erlenmeyer shake flasks which were inoculated with overnight cultures diluted that were 1:167. The cells were shaken at 250 rpm and 37°C for 24 hours to form biofilms on the glass wool, and RNA was isolated from the suspension cells and the biofilm. Keywords: E. coli biofilm

2007-09-21 | GSE6925 | GEO

Transcription profiling of E.coli ydgG mutant vs. isogenic wild type in a mature biofilm

Project description:The E. coli Genechip antisense genome array was used to study the differential gene expression profile of E. coli K12 ydgG mutant compared to its isogenic wild type in a mature biofilm. Experiment Overall Design: Overnight cultures were diluted 100X into 1 L shake flasks containing 250 mL of LB + 0.2 % and 10 g of glass wool. The cells were shaken at 250 rpm and 37 C for 24 hours (final OD600=5 for the suspended cells), to form a biofilm on the glass wool, and RNA was isolated from the biofilm and Affymetrix protocol was used for preparing fragmented and labelled cDNA that was hybrizide to the chips.

2008-06-12 | E-GEOD-3514 | biostudies-arrayexpress

P. aeruginosa PAO1 PA2663 mutant vs. wild type strain

Project description:P. aeruginosa PAO1 wild type and PA2663 mutant strains expression in biofilm cells relative to P. aeruginosa PAO1 wild type strain expression in biofilm cells. All samples cultured in LB with glass wool Keywords: Biofilm

2008-02-22 | GSE9255 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data