Browse
Submit Data
Databases
API
Help

Metabolomics,Unknown,Transcriptomics,Genomics,Proteomics

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Chromatin immunoprecipitation of mouse liver to identify the genome wide location of Foxa2 binding

ABSTRACT: Genome wide location analysis of Foxa2 in the liver using Agilent Mouse Promoter ChIP-on-Chip Microarray

ORGANISM(S): Mus musculus

SUBMITTER: Irina Bochkis

PROVIDER: E-MEXP-2111 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

ACCESS DATA

Json Xml

Similar Datasets

Chromatin immunopreciptiation of liver from wild type and Foxa2 knock out mice to identify Foxa2 binding sites

Project description:In order to identify the subset of genes directly regulated by Foxa2 in the liver, we performed genome-wide location analysis. Chromatin immunoprecipitation (ChIP) samples from livers of wild type and Foxa2 liver-conditional null mice (Foxa2loxP/loxPAlfp.Cre) were hybridized to a mouse enhancer/promoter microarray with more than 36,000 elements (BCBCPromChip 5). This analysis identified 574 enhancer and promoter regions, corresponding to 484 unique genes, as occupied by Foxa2 in the adult liver.

2008-07-14 | E-MEXP-1675 | biostudies-arrayexpress

Comparative genomic hybridization by array of samples from healthy individuals and patients with Verloes David Mesomelic Synostosis

Project description:Genomic comparison hybridization have been made between patients suffering of Verloes David Mesomelic Synostosis and 2 healthy references.

2011-05-31 | E-MEXP-2710 | biostudies-arrayexpress

Genomic profiling of high-risk diffuse large B-cell lymphoma patients treated with dose-dense chemoimmunotherapy

Project description:The aim of the study was to identify molecular mechanisms involved in high risk diffuse large B-cell lymphomas (diffuse large B-cell lymphomas). <br>51 prospectively collected tumor samples from the patients treated in the Nordic phase II study with dose-dense chemoimmunotherapy followed by systemic CNS prophylaxis were analyzed by high resolution array comparative genomic hybridization (aCGH). <br>The aCGH data were combined with the transcriptomics information from the exon array and the data associated with survival.

2012-03-30 | E-MEXP-3463 | biostudies-arrayexpress

ATLL clonality

Project description:Comparison of the genomic aberrations between periperal blood and lymph node samples with Adult T cell Leukemia/Lymphoma

2011-04-15 | E-MEXP-3042 | biostudies-arrayexpress

Transcription profiling of rat colon tumors induced by DMH

Project description:344 rats were treated twice, one week apart, with subcutaneous injections of 1,2-dimethylhydrazine (150 mg/kg x 2). Thirty-two weeks after the first DMH injection, rats were sacrificed and colonic tumours (T) and normal colon mucosa (NM) harvested and stored in RNAlater. Genomic DNA was extracted from ten samples of paired T and NM and hybridized on Agilent Rat Genome CGH Microarray 2x105K.

2010-07-20 | E-MEXP-2487 | biostudies-arrayexpress

Comparative genomic hybridization of a 38 year old human male with treatment related erythroleukaemia (AML-M6) and an abnormal karyotpe

Project description:Array CGH to detect somatic genomic copy number variation in a 38 year old male with treatment related erythroleukaemia (AML-M6)and an abnormal karyotpe

2010-01-09 | E-MEXP-2281 | biostudies-arrayexpress

Chromatin immunopreciptiation of human BJ-T cells with E2F2 and EwF4 antibodies

Project description:ChIp on chip with E2F2 or E2F4 antibodies on BJ-T cells.

2009-11-16 | E-MEXP-2169 | biostudies-arrayexpress

Comparative genomics among S. cerevisiae x S.kudriavzevii natural hybrid strains from wine and beer reveals different origins

Project description:Genome comparison between hybrid S. cerevisiae x S. kudriavzevii strains

2011-12-31 | E-MEXP-3114 | biostudies-arrayexpress

microRNA expression profile in isolated human pancreatic islets and in human pancreatic islet-derived extracellular vesicles -EVs-

Project description:Human pancreatic islets were isolated from pancreas of deceased donors by Ricordi's procedure and cultured in CMRL 1066 medium additioned with human albumin. EVs were isolated from conditioned medium derived from islet culture after isolation. Once isolated, RNA of islets and islet-derived EVs was extracted and analyzed for microRNA expression within 48 hours after isolation.

2012-07-30 | E-MEXP-3691 | biostudies-arrayexpress

transcriptional profile of islet EVs for diabetes genes

Project description:Identification of transcriptional profile of several genes involved in diabetes in islet-derived extracellular vesicles (Evs). Recently, EVs are identified as a new mechanism in cell-to-cell communication by transfer of protein and genic information (mRNA, microRNA). Their role is under investigation in immunology, stem cell and cancer, but not in islets and diabetes. The aim of this experiment is to identify mRNA transcripts (in particular, mRNA transcripts involved in diabetes pathophysiology) present in islet Evs.

2012-08-02 | E-MEXP-3695 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data