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Transcription profiling of Arabidopsis etiolated seedlings, light-treated seedlings, leaves and flowers hybridized to ATH1 and AGRONOMICS1 arrays

ABSTRACT: RNA from etiolated seedlings, light-treated seedlings, leaves and flowers was hybridized to ATH1 and AGRONOMICS1 arrays.

ORGANISM(S): Arabidopsis thaliana

SUBMITTER: Lars Hennig

PROVIDER: E-MEXP-2472 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

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AGRONOMICS1: a new resource for Arabidopsis transcriptome profiling.

Rehrauer Hubert H Aquino Catharine C Gruissem Wilhelm W Henz Stefan R SR Hilson Pierre P Laubinger Sascha S Naouar Naira N Patrignani Andrea A Rombauts Stephane S Shu Huan H Van de Peer Yves Y Vuylsteke Marnik M Weigel Detlef D Zeller Georg G Hennig Lars L

Plant physiology 20091223 2

Transcriptome profiling has become a routine tool in biology. For Arabidopsis (Arabidopsis thaliana), the Affymetrix ATH1 expression array is most commonly used, but it lacks about one-third of all annotated genes present in the reference strain. An alternative are tiling arrays, but previous designs have not allowed the simultaneous analysis of both strands on a single array. We introduce AGRONOMICS1, a new Affymetrix Arabidopsis microarray that contains the complete paths of both genome strand ...[more]

PMID: 20032078

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