Unknown,Transcriptomics,Genomics,Proteomics

Dataset Information

0

Genome-wide mRNA expression status of non-B non-C hepatocellular carcinoma assessed by SurePrint G3 Human GE 8x60K v2 Microarray (Agilent, USA)

ABSTRACT: Genome-wide mRNA expression analysis for clinical samples from patients in whom non-B non-C hepatocellular carcinoma developed. A pair of tissues (N=15 pairs) from non-tumor background and tumor was provided from every patient. A platform for this experiment was SurePrint G3 Human GE 8x60K v2 Microarray (Agilent, USA).

ORGANISM(S): Homo sapiens

SUBMITTER: Masanori Nojima 

PROVIDER: E-MTAB-4171 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

Json Xml
altmetric image

Publications

Global, cancer-specific microRNA cluster hypomethylation was functionally associated with the development of non-B non-C hepatocellular carcinoma.

Nojima Masanori M   Matsui Takeshi T   Tamori Akihiro A   Kubo Shoji S   Shirabe Ken K   Kimura Koichi K   Shimada Mitsuo M   Utsunomiya Tohru T   Kondo Yasuteru Y   Iio Etsuko E   Naito Yutaka Y   Ochiya Takahiro T   Tanaka Yasuhito Y  

Molecular cancer 20160430 1

<h4>Background</h4>While hepatitis B and C viral infection have been suppressed, non-B non-C hepatocellular carcinoma (NBNC-HCC) is considered to be rising in incidence terms in some developed countries where prevalence of those viral infections among HCC patients had been very high (such as Japan, Korea, and Italy). To elucidate critical molecular changes in NBNC-HCC, we integrated three large datasets relating to comprehensive array-based analysis of genome-wide DNA methylation (N = 43 pairs)  ...[more]

Similar Datasets

Transcriptomics Agilent SurePrint G3 Human V2 GE 8×60K microarray-BEAS-2B cells treatment with NiCl2
2018-04-17 | GSE67996 | GEO
Transcriptomics Gene expression signatures for GP73-induced non-obese nonalcoholic fatty liver disease
2020-12-29 | GSE163918 | GEO
Transcriptomics Genome-wide DNA methylation status of non-B non-C hepatocellular carcinoma assessed by Infinium HumanMethylation450 BeadChip Kit (Illumina, USA)
2017-03-31 | E-MTAB-4169 | biostudies-arrayexpress
Genomics Agilent SurePrint G3 Mouse GE V2.0 Microarray(8*60K,Design ID:074809)
| PRJNA699158 | ENA
Transcriptomics Genome-wide microRNA expression status of non-B non-C hepatocellular carcinoma assessed by 3D-Gene Human miRNA Oligo Chip (Toray, Japan)
2017-03-31 | E-MTAB-4170 | biostudies-arrayexpress
Transcriptomics Gene expression analysis of stimulated primary ASM cells [mRNA]
2014-05-28 | GSE57764 | GEO
Transcriptomics Expression data comparing BEL7402 HCC cells with or without PRMT6 stably repressed.
2021-01-01 | GSE97931 | GEO
Transcriptomics Expression Profiles of SUM149 cell treated by ACY1215
2016-08-23 | GSE72344 | GEO
Transcriptomics Profile of gene expression in K562 cells exposed to 2 mM sodium valproate for 12 hours using Agilent SurePrint G3 Human GE 8x60K Microarray.
2011-11-11 | E-GEOD-32189 | biostudies-arrayexpress
Methylation profiling Genome-wide profiling of DNA methylation and expression identifies CIMP in myelodysplastic syndrome [Illumina]
2013-10-29 | GSE51758 | GEO