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Metabolomics,Unknown,Transcriptomics,Genomics,Proteomics

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Comparative genomic hybridization of forty clinical isolates from twelve common serovars within Salmonella enterica subspecies I (sspI) to identify the conserved gene pool present

ABSTRACT: We have performed microarray hybridization studies on forty clinical isolates from twelve common serovars within Salmonella enterica subspecies I (sspI) to identify the conserved gene pool present.

ORGANISM(S): Salmonella enterica subspecies I

SUBMITTER: Gordon Dougan

PROVIDER: E-SGRP-1 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

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Identification of core and variable components of the Salmonella enterica subspecies I genome by microarray.

Anjum Muna F MF Marooney Chris C Fookes Maria M Baker Stephen S Dougan Gordon G Ivens Al A Woodward Martin J MJ

Infection and immunity 20051201 12

We have performed microarray hybridization studies on 40 clinical isolates from 12 common serovars within Salmonella enterica subspecies I to identify the conserved chromosomal gene pool. We were able to separate the core invariant portion of the genome by a novel mathematical approach using a decision tree based on genes ranked by increasing variance. All genes within the core component were confirmed using available sequence and microarray information for S. enterica subspecies I strains. The ...[more]

PMID: 16299280

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